Evidence map›Paper›PMID 17576756›Full record

ArticleInfection and immunity2007

Staphylococcus aureus biofilm metabolism and the influence of arginine on polysaccharide intercellular adhesin synthesis, biofilm formation, and pathogenesis.

Yefei Zhu, Elizabeth C Weiss, Michael Otto, Paul D Fey, Mark S Smeltzer, Greg A Somerville

Abstract read
In one paragraph

Article in Infection and immunity, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed, 1 pooled it
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed, 1 synthesis or guideline pooled it, 151 citations in OpenAlex.

  1. Guideline
  2. The metabolic trap:Journal of medical microbiology · 2026
    Article
  3. Article
  4. ArgT functions as an arginine transporter inJournal of bacteriology · 2025
    Article
  5. Article
  6. Article
  7. Arginine at the host-pathogen interface.Infection and immunity · 2025
    Review
  8. Article
  9. Article
  10. d-[5-ACS infectious diseases · 2025
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. One Step Forward with Dry Surface Biofilm (DSB) ofInternational journal of molecular sciences · 2022
    Article

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Yefei ZhuDepartment of Veterinary and Biomedical Sciences, University of Nebraska, 155 VBS, East Campus Loop, Lincoln, NE 68583, USA.
Elizabeth C Weiss
Michael Otto
Paul D Fey
Mark S Smeltzer
Greg A Somerville
University of Arkansas for Medical Sciences · USUniversity of Nebraska–Lincoln · USNational Institutes of Health · USUniversity of Nebraska Medical Center · US

Funding

Staphylococcus Epidermidis Biofilm FormationZ01AI000904 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI OTTO, MICHAEL J · 2002 to 2008
$2.5M
SAR-MEDIATED REGULATION IN STAPHYLOCOCCUS AUREUSR01AI043356 · NIAID · UNIV OF ARKANSAS FOR MED SCIS · PI SMELTZER, MARK S · 1998 to 2008
$2.0M
Environmental Regulation of Staphylococcus epidermidis PIA SynthesisR21GM076585 · NIGMS · UNIVERSITY OF NEBRASKA LINCOLN · PI SOMERVILLE, GREG ALAN · 2006 to 2007
$362k
Pathogenesis of staphylococcal biofilm-related infectionZ01AI001080 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI OTTO, MICHAEL · 2008 to 2008
$329k
Intramural NIH HHSNIAID NIH HHS AI43356NIAID NIH HHS R01 AI043356NIGMS NIH HHS GM076585NIGMS NIH HHS R21 GM076585
6 · The paper itself

Abstract

Staphylococcus aureus and Staphylococcus epidermidis are the leading causes of nosocomial infections in the United States and often are associated with biofilms attached to indwelling medical devices. Despite the importance of biofilms, there is very little consensus about the metabolic requirements of S. aureus during biofilm growth. To assess the metabolic requirements of S. aureus growing in a biofilm, we grew USA200 and USA300 clonal types in biofilm flow cells and measured the extraction and accumulation of metabolites. In spite of the genetic differences, both clonal types extracted glucose and accumulated lactate, acetate, formate, and acetoin, suggesting that glucose was catabolized to pyruvate that was then catabolized via the lactate dehydrogenase, pyruvate formate-lyase, and butanediol pathways. Additionally, both clonal types selectively extracted the same six amino acids (serine, proline, arginine, glutamine, glycine, and threonine) from the culture medium. These data and recent speculation about the importance of arginine in biofilm growth and the function of arginine deiminase in USA300 clones led us to genetically inactivate the sole copy of the arginine deiminase operon by deleting the arginine/ornithine antiporter gene (arcD) in the USA200 clonal type and to assess the effect on biofilm development and pathogenesis. Although inactivation of arcD did completely inhibit arginine transport and did reduce polysaccharide intercellular adhesin accumulation, arcD mutants formed biofilms and achieved cell densities in catheter infection studies that were equivalent to those for isogenic wild-type strains.

Indexed as

Bacterial AdhesionAdhesins, BacterialArginineBiofilmsMethicillin ResistanceMicrobial Sensitivity TestsPhenotypePolysaccharides, BacterialSpecies SpecificityStaphylococcus aureusAdhesins, BacterialArgininepolysaccharide intercellular adhesinPolysaccharides, Bacterial

Identifiers

PMID17576756
PMCPMC1951195
OpenAlexW2111112867

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.