ArticleMolecular genetics and genomics : MGG2007
Genetic diversity analysis in Vicia species using retrotransposon-based SSAP markers.
Article in Molecular genetics and genomics : MGG, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
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Who cites it
13 citing papers in PubMed.
- Designing Novel Strategies for Improving Old Legumes: An Overview from Common Vetch.Plants (Basel, Switzerland) · 2023Review
- Common Vetch, Valuable Germplasm for Resilient Agriculture: Genetic Characterization and Spanish Core Collection Development.Frontiers in plant science · 2021Article
- Analysis of genetic diversity in pigeon pea germplasm using retrotransposon-based molecular markers.Journal of genetics · 2017Article
- Article
- Genetic Diversity and Population Structure in Vicia faba L. Landraces and Wild Related Species Assessed by Nuclear SSRs.PloS one · 2016Article
- Advances in Faba Bean Genetics and Genomics.Frontiers in genetics · 2016Review
- Retrotransposon-based molecular markers for analysis of genetic diversity within the Genus Linum.BioMed research international · 2014Article
- Molecular diversity assessment using Sequence Related Amplified Polymorphism (SRAP) Markers in Vicia faba L.International journal of molecular sciences · 2012Article
- Two novel Ty1-copia retrotransposons isolated from coffee trees can effectively reveal evolutionary relationships in the Coffea genus (Rubiaceae).Molecular genetics and genomics : MGG · 2011Article
- Review
- Molecular markers based on LTR retrotransposons BARE-1 and Jeli uncover different strata of evolutionary relationships in diploid wheats.Molecular genetics and genomics : MGG · 2010Article
- High-throughput retrotransposon-based fluorescent markers: improved information content and allele discrimination.Plant methods · 2009Article
- Genetic mapping of the apospory-specific genomic region in Pennisetum squamulatum using retrotransposon-based molecular markers.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2009Article
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Twelve different Ty1-copia and Ty3-gypsy group LTR retrotransposons were compared for their usefulness in SSAP marker development in two agriculturally important Vicia species. Three of the retrotransposons, PDR1, Tps19 and Tvf4, yielded useful SSAP marker systems in V. faba, and V. narbonensis. Another, Tvf1 was a good source of SSAP markers in V. narbonensis alone. The optimized SSAP marker systems were applied to the analysis of two diverse Vicia germplasm sets. Two hundred and two polymorphic Tvf1 SSAP markers were scored in 56 V. narbonensis samples and 196 polymorphic markers derived from the other three most useful retrotransposons were scored in a collection of 20 V. faba samples. The marker data were then used to construct phylogenetic trees. The trees for both species tend to show long-branch lengths, with rather little fine structure. Some V. narbonensis accessions cluster by geographical origin but many do not and a given geographical region is often represented by multiple diverse groups in the tree, suggesting a deep and ancient structure for the diversity of V. narbonensis that spans its current geographic range. The tree for the V. faba accessions also shows very limited clustering with geographical origin and no obvious correlation between diversity and morphology-based taxonomic groupings for the species.
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