Evidence map›Paper›PMID 17575054›Full record

ArticleGenes & development2007

RNAi-dependent H3K27 methylation is required for heterochromatin formation and DNA elimination in Tetrahymena.

Yifan Liu, Sean D Taverna, Tara L Muratore, Jeffrey Shabanowitz, Donald F Hunt, C David Allis

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 151 papers.

0numbers the graph read from it
0cells of the map it votes in
151citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

151 citing papers in PubMed, 253 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. A PIWI protein-dependent DNA N6-adenine methylation pathway inbioRxiv : the preprint server for biology · 2026
    Article
  5. Article
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  7. On the Hunt for the Histone Code.Molecular & cellular proteomics : MCP · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Transcriptome analysis of the binucleate ciliateMolecular biology of the cell · 2023
    Article
  15. MITE infestation accommodated by genome editing in the germline genome of the ciliateProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  16. Article
  17. Article
  18. Delete and survive: strategies of programmed genetic material elimination in eukaryotes.Biological reviews of the Cambridge Philosophical Society · 2022
    Review
  19. Review
  20. Review

91 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Yifan LiuLaboratory of Chromatin Biology, The Rockefeller University, New York, New York 10021, USA.
Sean D Taverna
Tara L Muratore
Jeffrey Shabanowitz
Donald F Hunt
C David Allis
Rockefeller University · USUniversity of Virginia · US

Funding

PROTEIN SEQUENCING BY TANDEM MASS SPECTROMETRYR01GM037537 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI HUNT, DONALD F · 1987 to 2023
$17.8M
Chromatin Remodeling and Programmed DNA EliminationR01GM063959 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI ALLIS, CHARLES DAVID · 2001 to 2008
$3.1M
Heterochromatin formation in X-inactivationF32GM075575 · NIGMS · ROCKEFELLER UNIVERSITY · PI LIU, YIFAN · 2006 to 2006
$49k
NIGMS NIH HHS F32 GM075575NIGMS NIH HHS GM075575NIGMS NIH HHS R01 GM037537NIGMS NIH HHS R01 GM063959NIGMS NIH HHS R01 GM37537NIGMS NIH HHS R01 GM63959
6 · The paper itself

Abstract

Methylated H3K27 is an important mark for Polycomb group (PcG) protein-mediated transcriptional gene silencing (TGS) in multicellular eukaryotes. Here a Drosophila E(z) homolog, EZL1, is characterized in the ciliated protozoan Tetrahymena thermophila and is shown to be responsible for H3K27 methylation associated with developmentally regulated heterochromatin formation and DNA elimination. Importantly, Ezl1p-catalyzed H3K27 methylation occurs in an RNA interference (RNAi)-dependent manner. H3K27 methylation also regulates H3K9 methylation in these processes. Furthermore, an "effector" of programmed DNA elimination, the chromodomain protein Pdd1p, is shown to bind both K27- and K9-methylated H3. These studies provide a framework for an RNAi-dependent, Polycomb group protein-mediated heterochromatin formation pathway in Tetrahymena and underscore the connection between the two highly conserved machineries in eukaryotes.

Indexed as

AnimalsChromosome BreakageDNA, ProtozoanHeterochromatinHistonesMethylationMethyltransferasesModels, BiologicalNuclear ProteinsPhosphoproteinsPolycomb-Group ProteinsProtozoan ProteinsRepressor ProteinsRNA InterferenceTetrahymena thermophilaDNA, ProtozoanHeterochromatinHistonesMethyltransferasesNuclear ProteinsPdd1 protein, TetrahymenaPhosphoproteinsPolycomb-Group ProteinsProtozoan ProteinsRepressor Proteins

Identifiers

PMID17575054
PMCPMC1891430
OpenAlexW2166186329

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.