Evidence map›Paper›PMID 17572675›Full record

ArticleNature genetics2007

Comparative genomic analysis of three Leishmania species that cause diverse human disease.

Christopher S Peacock, Kathy Seeger, David Harris, Lee Murphy, Jeronimo C Ruiz, Michael A Quail, Nick Peters, Ellen Adlem, Adrian Tivey, Martin Aslett and 32 more

Open access · greenAbstract readComparative Study
In one paragraph

Article in Nature genetics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 371 papers.

0numbers the graph read from it
0cells of the map it votes in
371citing papers in PubMed
51.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

371 citing papers in PubMed, 762 citations in OpenAlex.

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311 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

42 authors at 7 institutions in 3 countries.

Christopher S PeacockWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SA, UK. csp@sanger.ac.uk
Kathy Seeger
David Harris
Lee Murphy
Jeronimo C Ruiz
Michael A Quail
Nick Peters
Ellen Adlem
Adrian Tivey
Martin Aslett
Arnaud Kerhornou
Alasdair Ivens
Audrey Fraser
Marie-Adele Rajandream
Tim Carver
Halina Norbertczak
Tracey Chillingworth
Zahra Hance
Kay Jagels
Sharon Moule
Doug Ormond
Simon Rutter
Rob Squares
Sally Whitehead
Ester Rabbinowitsch
Claire Arrowsmith
Brian White
Scott Thurston
Frédéric Bringaud
Sandra L Baldauf
Adam Faulconbridge
Daniel Jeffares
Daniel P Depledge
Samuel O Oyola
James D Hilley
Loislene O Brito
Luiz R O Tosi
Barclay Barrell
Angela K Cruz
Jeremy C Mottram
Deborah F Smith
Matthew Berriman
Wellcome Sanger Institute · GBUniversity of York · GBUniversidade de Ribeirão Preto · BRUniversidade de São Paulo · BRCentre National de la Recherche Scientifique · FRUniversity of Glasgow · GBWellcome Centre for Molecular Parasitology · GB

Funding

Medical Research Council G0000508Wellcome Trust 076355Wellcome Trust 085775
6 · The paper itself

Abstract

Leishmania parasites cause a broad spectrum of clinical disease. Here we report the sequencing of the genomes of two species of Leishmania: Leishmania infantum and Leishmania braziliensis. The comparison of these sequences with the published genome of Leishmania major reveals marked conservation of synteny and identifies only approximately 200 genes with a differential distribution between the three species. L. braziliensis, contrary to Leishmania species examined so far, possesses components of a putative RNA-mediated interference pathway, telomere-associated transposable elements and spliced leader-associated SLACS retrotransposons. We show that pseudogene formation and gene loss are the principal forces shaping the different genomes. Genes that are differentially distributed between the species encode proteins implicated in host-pathogen interactions and parasite survival in the macrophage.

Indexed as

GenomeGenomicsAmino Acid SequenceAnimalsHumansLeishmaniaLeishmania braziliensisLeishmania infantumLeishmania majorLeishmaniasisLeishmaniasis, CutaneousLeishmaniasis, VisceralMolecular Sequence Data

Identifiers

PMID17572675
PMCPMC2592530
OpenAlexW2170302951

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.