Evidence map›Paper›PMID 17572670›Full record

ArticleNature chemical biology2007

Calcium Green FlAsH as a genetically targeted small-molecule calcium indicator.

Oded Tour, Stephen R Adams, Rex A Kerr, Rene M Meijer, Terrence J Sejnowski, Richard W Tsien, Roger Y Tsien

Abstract read
In one paragraph

Article in Nature chemical biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
7.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 191 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Review
  5. Article
  6. The virtues and vices of protein citrullination.Royal Society open science · 2022
    Review
  7. Article
  8. Review
  9. Review
  10. Review
  11. Rotamer-Restricted Fluorogenicity of the Bis-Arsenical ReAsH.Journal of the American Chemical Society · 2016
    Article
  12. Article
  13. Fast kinetics of calcium signaling and sensor design.Current opinion in chemical biology · 2015
    Review
  14. Review
  15. Article
  16. Ion channel engineering: perspectives and strategies.Journal of molecular biology · 2015
    Review
  17. Article
  18. Article
  19. Review
  20. Review

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Oded TourHoward Hughes Medical Institute, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093-0647, USA.
Stephen R Adams
Rex A Kerr
Rene M Meijer
Terrence J Sejnowski
Richard W Tsien
Roger Y Tsien
University of California, San Diego · USCenter for Theoretical Biological Physics · USHoward Hughes Medical Institute · USStanford University · US

Funding

DYNAMICS OF SIGNAL TRANSDUCTION IN NEURONSR01NS027177 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ADAMS, STEPHEN ROY, ELLISMAN, MARK H · 1989 to 2017
$5.8M
DYNAMICS OF SIGNAL TRANSDUCTION IN NEURONSR37NS027177 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI TSIEN, ROGER Y · 2007 to 2013
$4.8M
Simulation of Activation of CaMKII in Glutamatergic SynapsesP01NS044306 · NINDS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI SEJNOWKSI, TERRENCE I · 2003 to 2007
$4.1M
GENETICALLY TARGETABLE LABELS FOR LIGHT AND EM (RMI)P20GM072033 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI TSIEN, ROGER Y · 2004 to 2007
$2.5M
MCell/DReAMM: A Microphysiological Modeling EnvironmentR01GM068630 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI STILES, JOEL R. · 2003 to 2006
$2.0M
Howard Hughes Medical InstituteNIGMS NIH HHS GM068630NIGMS NIH HHS GM72033NIGMS NIH HHS P20 GM072033NIGMS NIH HHS R01 GM068630NINDS NIH HHS NS0044306NINDS NIH HHS NS27177NINDS NIH HHS P01 NS044306NINDS NIH HHS R01 NS027177NINDS NIH HHS R37 NS027177
6 · The paper itself

Abstract

Intracellular Ca(2+) regulates numerous proteins and cellular functions and can vary substantially over submicron and submillisecond scales, so precisely localized fast detection is desirable. We have created a approximately 1-kDa biarsenical Ca(2+) indicator, called Calcium Green FlAsH (CaGF, 1), to probe [Ca(2+)] surrounding genetically targeted proteins. CaGF attached to a tetracysteine motif becomes ten-fold more fluorescent upon binding Ca(2+), with a K(d) of approximately 100 microM, <1-ms kinetics and good Mg(2+) rejection. In HeLa cells expressing tetracysteine-tagged connexin 43, CaGF labels gap junctions and reports Ca(2+) waves after injury. Total internal reflection microscopy of tetracysteine-tagged, CaGF-labeled alpha(1C) L-type calcium channels shows fast-rising depolarization-evoked Ca(2+) transients, whose lateral nonuniformity suggests that the probability of channel opening varies greatly over micron dimensions. With moderate Ca(2+) buffering, these transients decay surprisingly slowly, probably because most of the CaGF signal comes from closed channels feeling Ca(2+) from a tiny minority of clustered open channels. With high Ca(2+) buffering, CaGF signals decay as rapidly as the calcium currents, as expected for submicron Ca(2+) domains immediately surrounding active channels. Thus CaGF can report highly localized, rapid [Ca(2+)] dynamics.

Indexed as

CalciumCalcium Channels, L-TypeCalcium SignalingCell LineCells, CulturedConnexin 43HeLa CellsHumansKineticsLuminescent AgentsModels, BiologicalOrganic ChemicalsRecombinant ProteinsSensitivity and SpecificityTime FactorsCalciumCalcium Channels, L-Typecalcium greenConnexin 43Luminescent AgentsOrganic ChemicalsRecombinant Proteins

Identifiers

PMID17572670
PMCPMC2909385
OpenAlexW2074589989

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.