Evidence map›Paper›PMID 17570842›Full record

ArticleGenome biology2007

Celsius: a community resource for Affymetrix microarray data.

Allen Day, Marc R J Carlson, Jun Dong, Brian D O'Connor, Stanley F Nelson

Abstract read
In one paragraph

Article in Genome biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Mutations in RSPH1 cause primary ciliary dyskinesia with a unique clinical and ciliary phenotype.American journal of respiratory and critical care medicine · 2014
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  8. Review
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  15. Gene expression profile correlates with T-cell infiltration and relative survival in glioblastoma patients vaccinated with dendritic cell immunotherapy.Clinical cancer research : an official journal of the American Association for Cancer Research · 2011
    Article
  16. Data standards for Omics data: the basis of data sharing and reuse.Methods in molecular biology (Clifton, N.J.) · 2011
    Review
  17. The GMOD Drupal bioinformatic server framework.Bioinformatics (Oxford, England) · 2010
    Article
  18. Article
  19. Article
  20. Divergence of human and mouse brain transcriptome highlights Alzheimer disease pathways.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Allen DayDepartment of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, California, 90095, USA.
Marc R J Carlson
Jun Dong
Brian D O'Connor
Stanley F Nelson

Funding

UCLA NHLBI Shared Microarray FacilitiesR01HL072367 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI NELSON, STANLEY F. · 2002 to 2005
$3.0M
AHRQ HHS U24HS052108NHLBI NIH HHS HL72367NHLBI NIH HHS R01 HL072367
6 · The paper itself

Abstract

Celsius is a data warehousing system to aggregate Affymetrix CEL files and associated metadata. It provides mechanisms for importing, storing, querying, and exporting large volumes of primary and pre-processed microarray data. Celsius contains ten billion assay measurements and affiliated metadata. It is the largest publicly available source of Affymetrix microarray data, and through sheer volume it allows a sophisticated, broad view of transcription that has not previously been possible.

Indexed as

Database Management SystemsDatabases, GeneticOligonucleotide Array Sequence AnalysisAnimalsGene Expression ProfilingHumans

Identifiers

PMID17570842
PMCPMC2394754

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.