Evidence map›Paper›PMID 17567611›Full record

ArticleNucleic acids research2007

Cockayne syndrome B protein stimulates apurinic endonuclease 1 activity and protects against agents that introduce base excision repair intermediates.

Heng-Kuan Wong, Meltem Muftuoglu, Gad Beck, Syed Z Imam, Vilhelm A Bohr, David M Wilson

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed, 113 citations in OpenAlex.

  1. Review
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  7. Article
  8. Article
  9. Review
  10. Review
  11. Review
  12. Nucleotide excision repair: a versatile and smart toolkit.Acta biochimica et biophysica Sinica · 2022
    Review
  13. XPG: a multitasking genome caretaker.Cellular and molecular life sciences : CMLS · 2022
    Review
  14. Article
  15. Article
  16. Review
  17. Review
  18. Review
  19. The Multiple Cellular Roles of SMUG1 in Genome Maintenance and Cancer.International journal of molecular sciences · 2021
    Review
  20. Review

15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Heng-Kuan WongLaboratory of Molecular Gerontology, National Institute on Aging, NIH, 5600 Nathan Shock Drive, Baltimore, MD 21224, USA.
Meltem Muftuoglu
Gad Beck
Syed Z Imam
Vilhelm A Bohr
David M Wilson
South Texas Veterans Health Care System · USNational Institute on Aging · USThe University of Texas Health Science Center at San Antonio · US

Funding

Oxidative DNA Damage And Its ProcessingZIAAG000727 · NIA · NATIONAL INSTITUTE ON AGING · PI FERRUCCI, LUIGI · 2009 to 2022
$8.4M
Oxidative DNA Damage Repair in Premature Aging and NeurodegenerationZIAAG000751 · NIA · NATIONAL INSTITUTE ON AGING · PI BOHR, VILHELM A · 2009 to 2019
$5.3M
Repair Mechanisms For Oxidative DNA DamageZIAAG000743 · NIA · NATIONAL INSTITUTE ON AGING · PI WILSON, DAVID · 2009 to 2015
$2.5M
REPAIR OF OXIDATIVE DNA DAMAGEZ01AG000727 · NIA · NATIONAL INSTITUTE ON AGING · PI BOHR, VILHELM A · 1994 to 2008
$1.3M
Repair Mechanisms For Strand Breaks in DNAZ01AG000743 · NIA · NATIONAL INSTITUTE ON AGING · PI WILSON, DAVID M · 2002 to 2008
$932k
Base Excision DNA Repair in Premature Aging and NeurodegenerationZ01AG000751 · NIA · NATIONAL INSTITUTE ON AGING · PI WILSON, DAVID · 2008 to 2008
$197k
Intramural NIH HHS
6 · The paper itself

Abstract

The Cockayne syndrome B (CSB) protein--defective in a majority of patients suffering from the rare autosomal disorder CS--is a member of the SWI2/SNF2 family with roles in DNA repair and transcription. We demonstrate herein that purified recombinant CSB and the major human apurinic/apyrimidinic (AP) endonuclease, APE1, physically and functionally interact. CSB stimulates the AP site incision activity of APE1 on normal (i.e. fully paired) and bubble AP-DNA substrates, with the latter being more pronounced (up to 6-fold). This activation is ATP-independent, and specific for the human CSB and full-length APE1 protein, as no CSB-dependent stimulation was observed with Escherichia coli endonuclease IV or an N-terminal truncated APE1 fragment. CSB and APE1 were also found in a common protein complex in human cell extracts, and recombinant CSB, when added back to CSB-deficient whole cell extracts, resulted in increased total AP site incision capacity. Moreover, human fibroblasts defective in CSB were found to be hypersensitive to both methyl methanesulfonate (MMS) and 5-hydroxymethyl-2'-deoxyuridine, agents that introduce base excision repair (BER) DNA substrates/intermediates.

Indexed as

DNA RepairCell Line, TransformedDNA-(Apurinic or Apyrimidinic Site) LyaseDNA HelicasesDNA Repair EnzymesGenome, HumanHumansMethyl MethanesulfonatePoly-ADP-Ribose Binding ProteinsThymidine5-hydroxymethyl-2'-deoxyuridineAPEX1 protein, humanDNA-(Apurinic or Apyrimidinic Site) LyaseDNA HelicasesDNA Repair EnzymesERCC6 protein, humanMethyl MethanesulfonatePoly-ADP-Ribose Binding ProteinsThymidine

Identifiers

PMID17567611
PMCPMC1919475
OpenAlexW2171758261

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.