Evidence map›Paper›PMID 17567610›Full record

ArticleNucleic acids research2007

Multiple functions for the N-terminal region of Msh6.

Alan B Clark, Leesa Deterding, Kenneth B Tomer, Thomas A Kunkel

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
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  5. Review
  6. Article
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  10. Article
  11. MSH6 mutations arise in glioblastomas during temozolomide therapy and mediate temozolomide resistance.Clinical cancer research : an official journal of the American Association for Cancer Research · 2009
    Article
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  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Alan B ClarkLaboratory of Structural Biology, National Institute of Environmental Health Sciences, Research Triangle Park, North Carolina 27709, USA.
Leesa Deterding
Kenneth B Tomer
Thomas A Kunkel
National Institute of Environmental Health Sciences · US

Funding

Studies Of DNA Mismatch RepairZIAES065089 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI KUNKEL, THOMAS A · 2009 to 2025
$17.8M
Application Of Mass Spectrometry To Structural BiologyZIAES050127 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI TOMER, KENNETH · 2009 to 2013
$3.0M
Protein Characterization By Mass SpectrometryZIAES050171 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI TOMER, KENNETH · 2009 to 2013
$2.9M
APPLICATION OF MASS SPECTROMETRY TO STRUCTURAL BIOLOGYZ01ES050127 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI TOMER, KENNETH · 1993 to 2008
$1.8M
STUDIES OF DNA MISMATCH REPAIRZ01ES065089 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI KUNKEL, THOMAS A · 1997 to 2008
$1.3M
Protein Characterization By Mass SpectrometryZ01ES050171 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI TOMER, KENNETH · 2000 to 2008
$1.1M
Intramural NIH HHS
6 · The paper itself

Abstract

The eukaryotic mismatch repair protein Msh6 shares five domains in common with other MutS members. However, it also contains several hundred additional residues at its N-terminus. A few of these residues bind to PCNA, but the functions of the other amino acids in the N-terminal region (NTR) are unknown. Here we demonstrate that the Msh6 NTR binds to duplex DNA in a salt-sensitive, mismatch-independent manner. Partial proteolysis, DNA affinity chromatography and mass spectrometry identified a fragment comprised of residues 228-299 of yeast Msh6 that binds to DNA and is rich in positively charged residues. Deleting these residues, or replacing lysines and arginines with glutamate, reduces DNA binding in vitro and elevates spontaneous mutation rates and resistance to MNNG treatment in vivo. Similar in vivo defects are conferred by alanine substitutions in a highly conserved motif in the NTR that immediately precedes domain I of MutS proteins, the domain that interacts with mismatched DNA. These data suggest that, in addition to PCNA binding, DNA binding and possibly other functions in the amino terminal region of Msh6 are important for eukaryotic DNA mismatch repair and cellular response to alkylation damage.

Indexed as

Amino Acid MotifsAmino Acid SequenceBinding SitesConserved SequenceDNADNA-Binding ProteinsDNA Mismatch RepairMethylnitronitrosoguanidineMolecular Sequence DataMutation, MissensePeptidesProtein Structure, TertiarySaccharomyces cerevisiae ProteinsSequence DeletionDNADNA-Binding ProteinsG-T mismatch-binding proteinMethylnitronitrosoguanidineMSH6 protein, S cerevisiaePeptidesSaccharomyces cerevisiae Proteins

Identifiers

PMID17567610
PMCPMC1919485
OpenAlexW2163711652

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.