ArticleGenetics2007
Genome scan to detect genetic structure and adaptive genes of natural populations of Cryptomeria japonica.
Article in Genetics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
24 citing papers in PubMed.
- Chromosomal evolution and speciation inferred from chromosome-scale genome assemblies in three Cupressaceae species.DNA research : an international journal for rapid publication of reports on genes and genomes · 2026Article
- Climate-Associated Genetic Variation and Projected Genetic Offsets forEvolutionary applications · 2025Article
- Transcriptome differentiation in Cryptomeria japonica trees with different origins growing in the north and south of Japan.PloS one · 2025Article
- Article
- Population genetic structure and demography of Magnolia kobus: variety borealis is not supported genetically.Journal of plant research · 2019Article
- Inferring the demographic history of Japanese cedar, Cryptomeria japonica, using amplicon sequencing.Heredity · 2019Article
- Article
- Genetic structure of Hepatica nobilis var. japonica, focusing on within population flower color polymorphism.Journal of plant research · 2017Article
- Evidence for cryptic northern refugia in the last glacial period in Cryptomeria japonica.Annals of botany · 2014Article
- Range expansion and lineage admixture of the Japanese evergreen tree Machilus thunbergii in central Japan.Journal of plant research · 2014Article
- Genetic differentiation and evolutionary adaptation in Cryptomeria japonica.G3 (Bethesda, Md.) · 2014Article
- Comparative phylogeographic study of Hosta sieboldiana and Hosta albomarginata (Asparagaceae) in Japan.Ecology and evolution · 2013Article
- Article
- Genome scanning for detecting adaptive genes along environmental gradients in the Japanese conifer, Cryptomeria japonica.Heredity · 2012Article
- Multi-stemmed trees of Nothofagus pumilio second-growth forest in Patagonia are formed by highly related individuals.Annals of botany · 2012Article
- What can patterns of differentiation across plant genomes tell us about adaptation and speciation?Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2012Review
- Development of 101 gene-based single nucleotide polymorphism markers in sea cucumber, Apostichopus japonicus.International journal of molecular sciences · 2012Article
- Article
- Phylogeography of Japanese horse chestnut (Aesculus turbinata) in the Japanese Archipelago based on chloroplast DNA haplotypes.Journal of plant research · 2011Article
- Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak.BMC genomics · 2010Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We investigated 29 natural populations of Cryptomeria japonica using 148 cleaved amplified polymorphic sequence markers to elucidate their genetic structure and identify candidate adaptive genes of this species. In accordance with the inferred evolutionary history of the species during and after the last glacial episode, the genetic diversity was higher in western populations than in northern populations. The results of phylogenetic and genetic structure analyses suggest that populations of the two main varieties of the species have clearly diverged from each other and that two of the examined loci are strongly associated with the differentiation between the two varieties. Using a coalescent simulation based on F(ST) and H(e) values, we detected five genes that had higher, and two that had lower, values than the respective 99% confidence intervals (C.I.s) that are theoretically expected intervals under a neutral infinite-island model. We also detected 13 outlier loci using a coalescent simulation based on the assumption that the 2 varieties originated from the splitting of an ancestral population. Four of these loci were detected by both methods, two of which were detected in a genetic structure analysis as loci associated with differentiation between the two varieties of the species, and are strong candidates for genes that have been subject to selection.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.