ArticleGenetics2007
Predicting and testing physical locations of genetically mapped loci on tomato pachytene chromosome 1.
Article in Genetics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Who cites it
19 citing papers in PubMed, 36 citations in OpenAlex.
- The megabase-scale crossover landscape is largely independent of sequence divergence.Nature communications · 2022Article
- Chromosome-level assembly, genetic and physical mapping of Phalaenopsis aphrodite genome provides new insights into species adaptation and resources for orchid breeding.Plant biotechnology journal · 2018Article
- Meiotic Crossing Over in Maize Knob Heterochromatin.Genetics · 2017Article
- Highly distinct chromosomal structures in cowpea (Vigna unguiculata), as revealed by molecular cytogenetic analysis.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2016Article
- Application of a modified drop method for high-resolution pachytene chromosome spreads in two Phalaenopsis species.Molecular cytogenetics · 2016Article
- Sex-specific recombination maps for individual macrochromosomes in the Japanese quail (Coturnix japonica).Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2015Article
- Construction of cytogenetic map of Gossypium herbaceum chromosome 1 and its integration with genetic maps.Molecular cytogenetics · 2015Article
- Fluorescence in situ hybridization and optical mapping to correct scaffold arrangement in the tomato genome.G3 (Bethesda, Md.) · 2014Article
- Article
- Altered distribution of MLH1 foci is associated with changes in cohesins and chromosome axis compaction in an asynaptic mutant of tomato.Chromosoma · 2012Article
- Mutator-like elements with multiple long terminal inverted repeats in plants.Comparative and functional genomics · 2012Article
- Interspecific reproductive barriers in the tomato clade: opportunities to decipher mechanisms of reproductive isolation.Sexual plant reproduction · 2011Review
- An integrated molecular cytogenetic map of Cucumis sativus L. chromosome 2.BMC genetics · 2011Article
- Genetic fine-mapping of DIPLOSPOROUS in Taraxacum (dandelion; Asteraceae) indicates a duplicated DIP-gene.BMC plant biology · 2010Article
- Chromatin structure and physical mapping of chromosome 6 of potato and comparative analyses with tomato.Genetics · 2008Article
- Article
- Integration of cytogenetic and genetic linkage maps unveils the physical architecture of tomato chromosome 2.Genetics · 2008Article
- Cytological analysis of MRE11 protein during early meiotic prophase I in Arabidopsis and tomato.Chromosoma · 2008Article
- Relationship between physical and genetic distances along the zebra finch Z chromosome.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2008Article
Corrections and comments
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Authors and funding
5 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Predicting the chromosomal location of mapped markers has been difficult because linkage maps do not reveal differences in crossover frequencies along the physical structure of chromosomes. Here we combine a physical crossover map based on the distribution of recombination nodules (RNs) on Solanum lycopersicum (tomato) synaptonemal complex 1 with a molecular genetic linkage map from the interspecific hybrid S. lycopersicum x S. pennellii to predict the physical locations of 17 mapped loci on tomato pachytene chromosome 1. Except for one marker located in heterochromatin, the predicted locations agree well with the observed locations determined by fluorescence in situ hybridization. One advantage of this approach is that once the RN distribution has been determined, the chromosomal location of any mapped locus (current or future) can be predicted with a high level of confidence.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.