Evidence map›Paper›PMID 17561809›Full record

ArticleThe Biochemical journal2007

Sp1 and Sp3 control constitutive expression of the human NHE2 promoter by interactions with the proximal promoter and the transcription initiation site.

Ian Pearse, Ying X Zhu, Eleanor J Murray, Pradeep K Dudeja, Krishnamurthy Ramaswamy, Jaleh Malakooti

Open access · bronzeAbstract read
In one paragraph

Article in The Biochemical journal, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Article
  6. Involvement of FLIP in 2-methoxyestradiol-induced tumor regression in transgenic adenocarcinoma of mouse prostate model.Clinical cancer research : an official journal of the American Association for Cancer Research · 2009
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Ian PearseDepartment of Medicine, Section of Digestive Diseases and Nutrition, University of Illinois at Chicago, 840 South Wood Street, Chicago, IL 60612, USA.
Ying X Zhu
Eleanor J Murray
Pradeep K Dudeja
Krishnamurthy Ramaswamy
Jaleh Malakooti
University of Illinois Chicago · US

Funding

Transcriptional Regulation of NHE-3 Isoform in Human IntestineP01DK067887 · NIDDK · UNIVERSITY OF ILLINOIS AT CHICAGO · PI HECHT, GAIL A · 2006 to 2011
$4.9M
TRANSPORT MECHANISMS IN THE SMALL INTESTINER01DK033349 · NIDDK · UNIVERSITY OF ILLINOIS AT CHICAGO · PI DUDEJA, PRADEEP K · 1986 to 2012
$3.8M
Transcriptional Regulation of NHE3 in Human IntestineR01DK067990 · NIDDK · UNIVERSITY OF ILLINOIS AT CHICAGO · PI RAMASWAMY, KRISHNAMURTHY · 2004 to 2006
$624k
NIDDK NIH HHS P01 DK067887NIDDK NIH HHS P01-DK067887NIDDK NIH HHS R01 DK033349NIDDK NIH HHS R01 DK067990NIDDK NIH HHS R01-DK33349NIDDK NIH HHS R01-DK67990
6 · The paper itself

Abstract

We have previously cloned the human Na+/H+ exchanger NHE2 gene and its promoter region. In the present study, the regulatory elements responsible for the constitutive expression of NHE2 were studied. Transient transfection assays revealed that the -40/+150 promoter region contains the core promoter responsible for the optimal promoter activity. A smaller fragment, -10/+40, containing the TIS (transcription initiation site) showed minimal activity. We identified a palindrome that overlaps the TIS and binds to the transcription factors Sp1 and Sp3. Mutations in the 5' flank of the palindrome abolished the Sp1/Sp3 interaction and reduced promoter activity by approx. 45%. In addition, a conserved GC-box centered at -25 was found to play a critical role in basal promoter activity and also interacted with Sp1 and Sp3. An internal deletion in the GC-box severely reduced the promoter activity. Sp1/Sp3 binding to these elements was established using gel-mobility shift assays, confirmed by chromatin immunoprecipitation and co-transfections in Drosophila SL2 cells. Furthermore, we identified two positive regulatory elements in the DNA region corresponding to the 5'-UTR (5'-untranslated region). The results in the present study indicate that Sp1 and Sp3 are required for constitutive NHE2 expression and that the positive regulatory elements of the 5'-UTR may co-operate with the 5'-flanking region to achieve the optimal promoter activity.

Indexed as

Promoter Regions, Genetic5' Untranslated RegionsAnimalsBinding SitesCells, CulturedCpG IslandsDrosophilaHumansMutationRegulatory Elements, TranscriptionalSodium-Hydrogen ExchangersSp1 Transcription FactorSp3 Transcription FactorTranscription Initiation Site5' Untranslated RegionsSLC9A2 protein, humanSodium-Hydrogen ExchangersSp1 Transcription FactorSp3 Transcription Factor

Identifiers

PMID17561809
PMCPMC2267401
OpenAlexW2057787812

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.