Evidence map›Paper›PMID 17556624›Full record

ArticleThe American journal of tropical medicine and hygiene2007

Use of multiple displacement amplification to increase the detection and genotyping of trypanosoma species samples immobilized on FTA filters.

Liam J Morrison, Gillian McCormack, Lindsay Sweeney, Anne C L Likeufack, Philippe Truc, C Michael Turner, Andy Tait, Annette MacLeod

Abstract readComparative Study
In one paragraph

Article in The American journal of tropical medicine and hygiene, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Liam J MorrisonWellcome Centre for Molecular Parasitology, University of Glasgow, Glasgow, United Kingdom. lm78y@udcf.gla.ac.uk
Gillian McCormack
Lindsay Sweeney
Anne C L Likeufack
Philippe Truc
C Michael Turner
Andy Tait
Annette MacLeod

Funding

Wellcome Trust 079703
6 · The paper itself

Abstract

Whole genome amplification methods are a recently developed tool for amplifying DNA from limited template. We report its application in trypanosome infections, characterized by low parasitemias. Multiple displacement amplification (MDA) amplifies DNA with a simple in vitro step and was evaluated on mouse blood samples on FTA filter cards with known numbers of Trypanosoma brucei parasites. The data showed a 20-fold increase in the number of PCRs possible per sample, using primers diagnostic for the multicopy ribosomal ITS region or 177-bp repeats, and a 20-fold increase in sensitivity over nested PCR against a single-copy microsatellite. Using MDA for microsatellite genotyping caused allele dropout at low DNA concentrations, which was overcome by pooling multiple MDA reactions. The validity of using MDA was established with samples from Human African Trypanosomiasis patients. The use of MDA allows maximal use of finite DNA samples and may prove a valuable tool in studies where multiple reactions are necessary, such as population genetic analyses.

Indexed as

AnimalsDNA, ProtozoanDNA, Ribosomal SpacerGenome, ProtozoanGenotypeHumansMicrosatellite RepeatsPolymerase Chain ReactionTrypanosoma brucei bruceiTrypanosomiasis, AfricanDNA, ProtozoanDNA, Ribosomal Spacer

Identifiers

PMID17556624
PMCPMC2067248

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.