Evidence map›Paper›PMID 17556539›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2007

Dynamics of equilibrium structural fluctuations of apomyoglobin measured by fluorescence correlation spectroscopy.

Huimin Chen, Elizabeth Rhoades, James S Butler, Stewart N Loh, Watt W Webb

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 77 citations in OpenAlex.

  1. Article
  2. Article
  3. Characterization of Fluorescent Proteins with Intramolecular Photostabilization*.Chembiochem : a European journal of chemical biology · 2021
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  12. Identification of a helical intermediate in trifluoroethanol-induced alpha-synuclein aggregation.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
  13. Article
  14. Mechanisms of quenching of Alexa fluorophores by natural amino acids.Journal of the American Chemical Society · 2010
    Article
  15. Article
  16. Article
  17. Article
  18. Biophysical characterization of intrinsically disordered proteins.Current opinion in structural biology · 2009
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Huimin ChenSchool of Applied and Engineering Physics, Cornell University, Ithaca, NY 14853, USA.
Elizabeth Rhoades
James S Butler
Stewart N Loh
Watt W Webb
Cornell University · USSUNY Upstate Medical University · US

Funding

Biotechnology Resource Digital Electro-Optical ImagingP41EB001976 · NIBIB · CORNELL UNIVERSITY ITHACA · PI ZIPFEL, WARREN R · 2003 to 2010
$6.9M
Multiphoton Detection of CancerR01CA116583 · NCI · CORNELL UNIVERSITY ITHACA · PI ZIPFEL, WARREN R · 2005 to 2009
$2.0M
Nascent Dynamic Intermediates in Amyloid AggregationR21AG026650 · NIA · CORNELL UNIVERSITY ITHACA · PI WEBB, WATT W · 2005 to 2006
$365k
NCI NIH HHS R01 CA116583NCI NIH HHS R01-CA116583-01NIA NIH HHS 1-R21-AG026650NIA NIH HHS R21 AG026650NIBIB NIH HHS P41 EB001976
6 · The paper itself

Abstract

The spectra of equilibrium chain conformation fluctuations of apomyoglobin (apoMb) as a function of folding, from the acid-denatured state at pH 2.6 through the stable molten globule state pH approximately 4.1 to the folded state at pH 6.3, are reported, as measured by fluorescence correlation spectroscopy. The conformational fluctuations, which are detected by quenching of an N-terminal fluorescent label by contact with various amino acids, can be represented by superpositions of decaying exponentials with time scales ranging from approximately 3 to approximately 200 micros. Both the time scales and amplitudes of the fluctuations increase with the degree of acid denaturation, with principal shifts associated with the transition across the molten globule state. Measurements of the diffusion of apoMb confirm theoretical values showing a approximately 40% increase in the hydrodynamic radius upon acid denaturation. This study uses the model protein apoMb to illustrate the complex scope of folding associated structural dynamics.

Indexed as

Protein ConformationProtein DenaturationProtein FoldingSpectrometry, FluorescenceAmino Acid SequenceApoproteinsCloning, MolecularDiffusionGene ExpressionHydrogen-Ion ConcentrationKineticsModels, MolecularMutationMyoglobinProtein Structure, SecondaryTime FactorsapomyoglobinApoproteinsMyoglobin

Identifiers

PMID17556539
PMCPMC1965535
OpenAlexW2035856057

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.