Evidence map›Paper›PMID 17554031›Full record

ArticleThe Journal of general virology2007

Mutations at the palmitoylation site of non-structural protein nsP1 of Semliki Forest virus attenuate virus replication and cause accumulation of compensatory mutations.

Eva Žusinaite, Kairit Tints, Kaja Kiiver, Pirjo Spuul, Liis Karo-Astover, Andres Merits, Inga Sarand

Open access · greenAbstract read
In one paragraph

Article in The Journal of general virology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
4.5field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
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  4. Article
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  8. Article
  9. Alphavirus Virulence Determinants.Pathogens (Basel, Switzerland) · 2021
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. ADP-ribosyl-binding and hydrolase activities of the alphavirus nsP3 macrodomain are critical for initiation of virus replication.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  15. A Chikungunya VirusJournal of virology · 2018
    Article
  16. Review
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Eva ŽusinaiteInstitute of Molecular and Cell Biology, University of Tartu, Nooruse 1, 50411 Tartu, Estonia.
Kairit TintsEstonian Biocentre, Riia Street 23, 51010 Tartu, Estonia.
Kaja KiiverEstonian Biocentre, Riia Street 23, 51010 Tartu, Estonia.
Pirjo SpuulInstitute of Biotechnology, University of Helsinki, 00014 Helsinki, Finland.
Liis Karo-AstoverEstonian Biocentre, Riia Street 23, 51010 Tartu, Estonia.
Andres MeritsInstitute of Molecular and Cell Biology, University of Tartu, Nooruse 1, 50411 Tartu, Estonia.
Inga SarandEstonian Biocentre, Riia Street 23, 51010 Tartu, Estonia.
University of Tartu · EEEstonian Biocentre · EEUniversity of Helsinki · FI

Funding

Wellcome Trust 067575
6 · The paper itself

Abstract

The replicase of Semliki Forest virus (SFV) consists of four non-structural proteins, designated nsP1-4, and is bound to cellular membranes via an amphipathic peptide and palmitoylated cysteine residues of nsP1. It was found that mutations preventing nsP1 palmitoylation also attenuated virus replication. The replacement of these cysteines by alanines, or their deletion, abolished virus viability, possibly due to disruption of interactions between nsP1 and nsP4, which is the catalytic subunit of the replicase. However, during a single infection cycle, the ability of the virus to replicate was restored due to accumulation of second-site mutations in nsP1. These mutations led to the restoration of nsP1-nsP4 interaction, but did not restore the palmitoylation of nsP1. The proteins with palmitoylation-site mutations, as well as those harbouring compensatory mutations in addition to palmitoylation-site mutations, were enzymically active and localized, at least in part, on the plasma membrane of transfected cells. Interestingly, deletion of 7 aa including the palmitoylation site of nsP1 had a relatively mild effect on virus viability and no significant impact on nsP1-nsP4 interaction. Similarly, the change of cysteine to alanine at the palmitoylation site of nsP1 of Sindbis virus had only a mild effect on virus replication. Taken together, these findings indicate that nsP1 palmitoylation as such is not the factor determining the ability to bind to cellular membranes and form a functional replicase complex. Instead, these abilities may be linked to the three-dimensional structure of nsP1 and the capability of nsP1 to interact with other components of the viral replicase complex.

Indexed as

Genes, ViralMutationAnimalsBinding SitesChlorocebus aethiopsCOS CellsCricetinaeHeLa CellsHumansPalmitic AcidsRepliconSemliki forest virusSubcellular FractionsTransfectionViral Nonstructural ProteinsVirulencePalmitic AcidsViral Nonstructural Proteins

Identifiers

PMID17554031
PMCPMC2271122
OpenAlexW2141322529

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.