Evidence map›Paper›PMID 17545200›Full record

ArticleNucleic acids research2007

MyHits: improvements to an interactive resource for analyzing protein sequences.

Marco Pagni, Vassilios Ioannidis, Lorenzo Cerutti, Monique Zahn-Zabal, C Victor Jongeneel, Jörg Hau, Olivier Martin, Dmitri Kuznetsov, Laurent Falquet

Abstract read
In one paragraph

Article in Nucleic acids research, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 105 papers.

0numbers the graph read from it
0cells of the map it votes in
105citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

105 citing papers in PubMed.

  1. A lectin receptor-like kinase controls self-pollen recognition inProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Functional characterization of hypothetical proteins from Monkeypox virus.Journal, genetic engineering & biotechnology · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. HPVMD-C: a disease-based mutation database of human papillomavirus in China.Database : the journal of biological databases and curation · 2022
    Article
  20. Domesticated LTR-RetrotransposonLife (Basel, Switzerland) · 2022
    Review

45 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Marco PagniSwiss Institute of Bioinformatics (SIB), Vital-IT Group, UNIL-Génopode, CH-1015 Lausanne, Switzerland.
Vassilios Ioannidis
Lorenzo Cerutti
Monique Zahn-Zabal
C Victor Jongeneel
Jörg Hau
Olivier Martin
Dmitri Kuznetsov
Laurent Falquet

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The MyHits web site (http://myhits.isb-sib.ch) is an integrated service dedicated to the analysis of protein sequences. Since its first description in 2004, both the user interface and the back end of the server were improved. A number of tools (e.g. MAFFT, Jacop, Dotlet, Jalview, ESTScan) were added or updated to improve the usability of the service. The MySQL schema and its associated API were revamped and the database engine (HitKeeper) was separated from the web interface. This paper summarizes the current status of the server, with an emphasis on the new services.

Indexed as

Protein Structure, TertiarySequence Analysis, ProteinSoftwareComputational BiologyComputer GraphicsDatabases, ProteinInternetProgramming LanguagesSequence AlignmentSystems IntegrationUser-Computer Interface

Identifiers

PMID17545200
PMCPMC1933190

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.