Evidence map›Paper›PMID 17543889›Full record

ArticleBiochemical and biophysical research communications2007

Family 18 chitolectins: comparison of MGP40 and HUMGP39.

Zaheer-ul-Haq, Pranav Dalal, Nathan N Aronson, Jeffry D Madura

Open access · greenAbstract readComparative Study
In one paragraph

Article in Biochemical and biophysical research communications, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 21 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Visualisation of cyclic and multi-branched molecules with VMD.Journal of molecular graphics & modelling · 2009
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Zaheer-ul-HaqDepartment of Chemistry & Biochemistry, Center for Computational Sciences, Duquesne University, Pittsburgh, PA 15282, USA.
Pranav Dalal
Nathan N Aronson
Jeffry D Madura
Duquesne University · USUniversity of South Alabama · US

Funding

STRUCTURE AND MECHANISMS OF FAMILY 18 CHITINASESR01GM059471 · NIGMS · DUQUESNE UNIVERSITY · PI MADURA, JEFFRY D. · 1998 to 2002
$642k
NIGMS NIH HHS GM59471NIGMS NIH HHS R01 GM059471
6 · The paper itself

Abstract

Glycosidase and lectins both bind sugars, but only the glycosidases have catalytic activity. The glycosidases occur among over 100 evolved protein families and Family 18 is one of the two chitinases (EC 3, 2.1.14) families. Interestingly, lectins are also in this evolutionary group of Family 18 glycosidase proteins. The proteins belonging to the enzymatically inactive class are referred to as chitolectins and have a binding site that is highly similar to the catalytic Family 18 enzymes. We present a comparison of the recently obtained structures of two Family 18 chitolectins, MGP40 [A.K. Mohanty, G. Singh, M. Paramasivam, K. Saravanan, T. Jabeen, S. Sharma, S. Yadav, P. Kaur, P. Kumar, A. Srinivasan, T.P. Singh, Crystal structure of a novel regulatory 40kDa mammary gland protein (MGP-40) secreted during involution, J. Biol. Chem. 278 (2003) 14451-14460.] and HumGP39 [F. Fusetti, T. Pijning, K.H. Kalk, E. Bos, B.W. Dijkstra, Crystal structure and carbohydrate-binding properties of the human cartilage glycoprotein-39, J. Biol. Chem. 278 (2003) 37753-37760; D.R. Houston, D.R. Anneliese, C.K. Joanne, D.M.V. Aalten, Structure and ligand-induced conformational change of the 39kDa glycoprotein from human articular chondrocytes, J. Biol. Chem. 278 (2003) 30206-30212.] with a focus on the glycosidase active site. We compare the sequence and the structure of these two Family 18 protein classes. The difference between the active and inactive protein is a glutamic acid which acts as the essential acid/base residue for chitin cleavage and is replaced with leucine or glutamine in the chitolectins. Furthermore, a mechanism for the interaction between the chitolectin and oligosaccharides was proposed.

Indexed as

AdipokinesAmino Acid SequenceAntigens, NeoplasmBinding SitesCartilageChitinase-3-Like Protein 1ChondrocytesGlycoproteinsGlycoside HydrolasesHumansLectinsLigandsMembrane GlycoproteinsModels, MolecularMolecular Sequence DataSequence Homology, Amino AcidAdipokinesAntigens, NeoplasmCHI3L1 protein, humanChitinase-3-Like Protein 1glycoprotein 40 antigen, humanGlycoproteinsGlycoside HydrolasesLectinsLigandsMembrane Glycoproteins

Identifiers

PMID17543889
PMCPMC2020521
OpenAlexW2090745581

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.