Evidence map›Paper›PMID 17541642›Full record

ArticleHuman genetics2007

High-density single nucleotide polymorphism array analysis in patients with germline deletions of 22q11.2 and malignant rhabdoid tumor.

Eric M Jackson, Tamim H Shaikh, Sridharan Gururangan, Marilyn C Jones, David Malkin, Sarah M Nikkel, Craig W Zuppan, Luanne M Wainwright, Fan Zhang, Jaclyn A Biegel

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Human genetics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 76 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Genetics of pediatric renal tumors.Pediatric nephrology (Berlin, Germany) · 2013
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Copy number variations and cancer.Genome medicine · 2009
    Article
  14. Article
  15. Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 7 institutions in 2 countries.

Eric M JacksonDepartment of Neurosurgery, University of Pennsylvania School of Medicine, Philadelphia, PA, USA.
Tamim H Shaikh
Sridharan Gururangan
Marilyn C Jones
David Malkin
Sarah M Nikkel
Craig W Zuppan
Luanne M Wainwright
Fan Zhang
Jaclyn A Biegel
Children's Hospital of Philadelphia · USChildren's Hospital of Eastern Ontario · CADuke Medical Center · USHospital for Sick Children · CALoma Linda University Medical Center · USRady Children's Hospital-San Diego · USUniversity of Pennsylvania · US

Funding

COG FOREIGN ACCRUALU10CA098543 · NCI · NATIONAL CHILDHOOD CANCER FOUNDATION · PI ADAMSON, PETER C. · 2003 to 2013
$335.5M
MOLECULAR CYTOGENETICS: PEDIATRIC CNS TUMORSR01CA046274 · NCI · CHILDREN'S HOSP OF PHILADELPHIA · PI BIEGEL, JACLYN A · 1989 to 2012
$2.7M
Evolution of Chromosome-specific Low Copy RepeatsR01GM064725 · NIGMS · CHILDRENS HOSPITAL OF PHILADELPHIA · PI SHAIKH, TAMIM H · 2002 to 2005
$1000k
NCI NIH HHS CA46274NCI NIH HHS CA98543NIGMS NIH HHS GM64725
6 · The paper itself

Abstract

Malignant rhabdoid tumors are highly aggressive neoplasms found primarily in infants and young children. The majority of rhabdoid tumors arise as a result of homozygous inactivating deletions or mutations of the INI1 gene located in chromosome band 22q11.2. Germline mutations of INI1 predispose to the development of rhabdoid tumors of the brain, kidney and extra-renal tissues, consistent with its function as a tumor suppressor gene. We now describe five patients with germline deletions in chromosome band 22q11.2 that included the INI1 gene locus, leading to the development of rhabdoid tumors. Two patients had phenotypic findings that were suggestive but not diagnostic for DiGeorge/Velocardiofacial syndrome (DGS/VCFS). The other three infants had highly aggressive disease with multiple tumors at the time of presentation. The extent of the deletions was determined by fluorescence in situ hybridization and high-density oligonucleotide based single nucleotide polymorphism arrays. The deletions in the two patients with features of DGS/VCFS were distal to the region typically deleted in patients with this genetic disorder. The three infants with multiple primary tumors had smaller but overlapping deletions, primarily involving INI1. The data suggest that the mechanisms underlying the deletions in these patients may be similar to those that lead to DGS/VCFS, as they also appear to be mediated by related, low copy repeats (LCRs) in 22q11.2. These are the first reported cases in which an association has been established between recurrent, interstitial deletions mediated by LCRs in 22q11.2 and a predisposition to cancer.

Indexed as

Base SequenceChild, PreschoolChromosomal Proteins, Non-HistoneChromosomes, Human, Pair 22DiGeorge SyndromeDNA-Binding ProteinsDNA Mutational AnalysisFemaleGenetic Predisposition to DiseaseHumansInfantIn Situ Hybridization, FluorescenceMaleMolecular Sequence DataOligonucleotide Array Sequence AnalysisPolymorphism, Single NucleotideChromosomal Proteins, Non-HistoneDNA-Binding ProteinsSMARCB1 ProteinSMARCB1 protein, humanTranscription Factors

Identifiers

PMID17541642
OpenAlexW2057548569

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.