Evidence map›Paper›PMID 17541597›Full record

ArticlePlant cell reports2007

Polymorphism of SFBB-gamma and its use for S genotyping in Japanese pear (Pyrus pyrifolia).

Hiroyuki Kakui, Takeshi Tsuzuki, Takato Koba, Hidenori Sassa

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In one paragraph

Article in Plant cell reports, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

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  10. A segmental duplication encompassingMolecular breeding : new strategies in plant improvement · 2014
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4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

4 authors.

Hiroyuki KakuiGraduate School of Science and Technology, Chiba University, 648 Matsudo, Matsudo, Chiba 271-8510, Japan.
Takeshi Tsuzuki
Takato Koba
Hidenori Sassa

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Japanese pear (Pyrus pyrifolia) exhibits the S-RNase-based gametophytic self-incompatibility where the pollen-part determinant, pollen S, had long remained elusive. Recent identification of S locus F-box brothers (SFBB) in Japanese pear and apple suggested that the multiple F-box genes are the pollen S candidates as they exhibited pollen specific expression, S haplotype-specific polymorphisms and linkage to the S locus. In Japanese pear, three SFBBs were identified from a single S haplotype, and they were more homologous to other haplotype genes of the same group (i.e., alpha-, beta- and gamma-groups). In this study, we isolated new seven PpSFBB(-gamma) genes from different S genotypes of Japanese pear. These genes showed S haplotype-specific polymorphisms, however, sequence similarities among them were very high. Based on the sequence polymorphisms of the PpSFBB(-gamma) genes, we developed a CAPS/dCAPS system for S genotyping of the Japanese pear cultivars. This new S genotyping system was found to not only be able to discriminate the S(1)-S(9), but also be suitable for identification of the mutant S(4sm) haplotype for the breeding of self-compatible cultivars, and detection of new S haplotypes such as S(k).

Indexed as

Genes, PlantPolymorphism, GeneticAmino Acid SequenceBase SequenceCloning, MolecularGenotypeJapanMolecular Sequence DataMutationPlant ProteinsPyrusRestriction MappingSequence Analysis, DNAPlant Proteins

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.