ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2007
Analysis of expressed sequence tags from the fungus Aspergillus oryzae cultured under different conditions.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.
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Who cites it
31 citing papers in PubMed.
- Characterization of a novel bifunctional endo-β-1,4-glucanase/mannanase from Aspergillus oryzae.Applied microbiology and biotechnology · 2026Article
- Aspergillus oryzae PrtR alters transcription of individual peptidase genes in response to the growth environment.Applied microbiology and biotechnology · 2024Article
- Comparative Genome Analysis of Japanese Field-IsolatedJournal of fungi (Basel, Switzerland) · 2024Article
- Review
- Japanese TraditionalJournal of fungi (Basel, Switzerland) · 2021Review
- Advances in Genetic Engineering Technology and Its Application in the Industrial FungusFrontiers in microbiology · 2021Review
- Alternative transcription start sites of the enolase-encoding gene enoA are stringently used in glycolytic/gluconeogenic conditions in Aspergillus oryzae.Current genetics · 2020Article
- Exposure ofFrontiers in microbiology · 2019Article
- Transcriptome analysis of different growth stages of Aspergillus oryzae reveals dynamic changes of distinct classes of genes during growth.BMC microbiology · 2018Article
- The Peroxygenase Activity of theFrontiers in microbiology · 2018Article
- Fungi as a Source of Food.Microbiology spectrum · 2017Review
- Expression of ustR and the Golgi protease KexB are required for ustiloxin B biosynthesis in Aspergillus oryzae.AMB Express · 2016Article
- The molecular steps of citrinin biosynthesis in fungi.Chemical science · 2016Article
- Transcriptome Profile Analysis from Different Sex Types of Ginkgo biloba L.Frontiers in plant science · 2016Article
- Survey of protein-DNA interactions in Aspergillus oryzae on a genomic scale.Nucleic acids research · 2015Article
- Comparative Analysis of Aspergillus oryzae with Normal and Abnormal Color Conidia.Indian journal of microbiology · 2014Article
- Comparative study on the properties of lipopeptide products and expression of biosynthetic genes from Bacillus amyloliquefaciens XZ-173 in liquid fermentation and solid-state fermentation.World journal of microbiology & biotechnology · 2013Article
- Characterization of a fungal thioesterase having Claisen cyclase and deacetylase activities in melanin biosynthesis.Chemistry & biology · 2012Article
- Comparative genome analysis between Aspergillus oryzae strains reveals close relationship between sites of mutation localization and regions of highly divergent genes among Aspergillus species.DNA research : an international journal for rapid publication of reports on genes and genomes · 2012Article
- Gene cloning, purification, and characterization of a novel peptidoglutaminase-asparaginase from Aspergillus sojae.Applied and environmental microbiology · 2012Article
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Authors and funding
27 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We performed random sequencing of cDNAs from nine biologically or industrially important cultures of the industrially valuable fungus Aspergillus oryzae to obtain expressed sequence tags (ESTs). Consequently, 21 446 raw ESTs were accumulated and subsequently assembled to 7589 non-redundant consensus sequences (contigs). Among all contigs, 5491 (72.4%) were derived from only a particular culture. These included 4735 (62.4%) singletons, i.e. lone ESTs overlapping with no others. These data showed that consideration of culture grown under various conditions as cDNA sources enabled efficient collection of ESTs. BLAST searches against the public databases showed that 2953 (38.9%) of the EST contigs showed significant similarities to deposited sequences with known functions, 793 (10.5%) were similar to hypothetical proteins, and the remaining 3843 (50.6%) showed no significant similarity to sequences in the databases. Culture-specific contigs were extracted on the basis of the EST frequency normalized by the total number for each culture condition. In addition, contig sequences were compared with sequence sets in eukaryotic orthologous groups (KOGs), and classified into the KOG functional categories.
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