Evidence map›Paper›PMID 17540041›Full record

ArticleBMC genomics2007

The evolutionary conservation of the core components necessary for the extrinsic apoptotic signaling pathway, in Medaka fish.

Kazuhiro Sakamaki, Masami Nozaki, Katsuya Kominami, Yutaka Satou

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 59 citations in OpenAlex.

  1. Article
  2. Fish TNF and TNF receptors.Science China. Life sciences · 2021
    Review
  3. Transcriptome Analysis of Maternal Gene Transcripts in Unfertilized Eggs ofInternational journal of molecular sciences · 2020
    Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Functional evolution of the p53 regulatory network through its target response elements.Proceedings of the National Academy of Sciences of the United States of America · 2008
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Kazuhiro SakamakiDepartment of Animal Development and Physiology, Graduate School of Biostudies, Kyoto University, Kyoto, Japan. ksakamak@lif.kyoto-u.ac.jp
Masami Nozaki
Katsuya Kominami
Yutaka Satou
Kyoto University · JPOsaka University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundDeath receptors on the cell surface and the interacting cytosolic molecules, adaptors and initiator caspases, are essential as core components of the extrinsic apoptotic signaling pathway. While the apoptotic machinery governing the extrinsic signaling pathway is well characterized in mammals, it is not fully understood in fish.

resultsWe identified and characterized orthologs of mammalian Fas, FADD and caspase-8 that correspond to the death receptor, adaptor and initiator caspase, from the Medaka fish (Oryzias latipes). Medaka Fas, caspase-8 and FADD exhibited protein structures similar to that of their mammalian counterparts, containing a death domain (DD), a death effector domain (DED) or both. Functional analyses indicated that these molecules possess killing activity in mammalian cell lines upon overexpression or following activation by apoptotic stimuli, suggesting similar pro-apoptotic functions in the extrinsic pathway as those in mammals. Genomic sequence analysis revealed that the Medaka fas (tnfrsf6), fadd and caspase-8 (casp8) genes are organized in a similar genomic structure as the mammalian genes. Database search and phylogenetic analysis revealed that the fas gene, but not the fadd and casp8 genes, appear to be present only in vertebrates.

conclusionOur results indicate that the core components necessary for the extrinsic apoptotic pathway are evolutionarily conserved in function and structure across vertebrate species. Based on these results, we presume the mechanism of apoptosis induction via death receptors was evolutionarily established during the appearance of vertebrates.

Indexed as

ApoptosisEvolution, MolecularAmino Acid SequenceAnimalsBase SequenceCaspase 8Cells, CulturedDatabases, GeneticDNA, ComplementaryEmbryo, MammalianEmbryo, NonmammalianExonsExpressed Sequence TagsFas-Associated Death Domain ProteinFas Ligand ProteinFibroblastsCaspase 8DNA, ComplementaryFas-Associated Death Domain ProteinFas Ligand ProteinReceptors, Death Domain

Identifiers

PMID17540041
PMCPMC1903365
OpenAlexW2068084708

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.