Evidence map›Paper›PMID 17537861›Full record

ArticleJournal of virology2007

Genetic adaptation to untranslated region-mediated enterovirus growth deficits by mutations in the nonstructural proteins 3AB and 3CD.

Paola Florez de Sessions, Elena Dobrikova, Matthias Gromeier

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Emergency Services of Viral RNAs: Repair and Remodeling.Microbiology and molecular biology reviews : MMBR · 2018
    Review
  3. Review
  4. Article
  5. Article
  6. Article
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  12. Recombinant oncolytic poliovirus eliminates glioma in vivo without genetic adaptation to a pathogenic phenotype.Molecular therapy : the journal of the American Society of Gene Therapy · 2008
    Article
  13. Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

Paola Florez de SessionsDivision of Neurological Surgery, Department of Surgery, Duke University Medical Center, Box 3020, Durham, NC 27710, USA.
Elena Dobrikova
Matthias Gromeier
Duke Medical Center · USDuke University Hospital · USNeurological Surgery · US

Funding

TUMOR SUPPRESSOR GENES IN HUMAN MEDULLOBLASTOMAP50NS020023 · NINDS · DUKE UNIVERSITY · PI BIGNER, DARELL D · 1985 to 2013
$17.3M
Cell Type-Specific Viral Translation in the CNSR01CA087537 · NCI · DUKE UNIVERSITY · PI GROMEIER, MATTHIAS · 2002 to 2006
$1.2M
Cell Type Specific Viral Translation in the CNSR55CA087537 · NCI · DUKE UNIVERSITY · PI GROMEIER, MATTHIAS · 2001 to 2001
$100k
NCI NIH HHS CA 87537NCI NIH HHS R01 CA087537NCI NIH HHS R55 CA087537NINDS NIH HHS NS 20023NINDS NIH HHS P50 NS020023
6 · The paper itself

Abstract

Both untranslated regions (UTRs) of plus-strand RNA virus genomes jointly control translation and replication of viral genomes. In the case of the Enterovirus genus of the Picornaviridae family, the 5'UTR consists of a cloverleaf-like terminus preceding the internal ribosomal entry site (IRES) and the 3' terminus is composed of a structured 3'UTR and poly(A). The IRES and poly(A) have been implicated in translation control, and all UTR structures, in addition to cis-acting genetic elements mapping to the open reading frame, have been assigned roles in RNA replication. Viral UTRs are recognized by viral and host cell RNA-binding proteins that may co-determine genome stability, translation, plus- and minus-strand RNA replication, and scaffolding of viral replication complexes within host cell substructures. In this report, we describe experiments with coxsackie B viruses with a cell type-specific propagation deficit in Sk-N-Mc neuroblastoma cells conferred by the combination of a heterologous IRES and altered 3'UTR. Serial passage of these constructs in Sk-N-Mc cells yielded genetic adaptation by mutations within the viral nonstructural proteins 3A and 3C. Our data implicate 3A and/or 3C or their precursors 3AB and/or 3CD in a functional complex with the IRES and 3'UTR that drives viral propagation. Adaptation to neuroblastoma cells suggests an involvement of cell type-specific host factors or the host cell cytoplasmic milieu in this phenomenon.

Indexed as

3C Viral ProteasesAmino Acid SequenceCell Line, TumorCysteine EndopeptidasesEnterovirus B, HumanGenome, ViralHumansMolecular Sequence DataMutationNucleic Acid ConformationRNA, ViralUntranslated RegionsViral Nonstructural ProteinsViral ProteinsVirus Replication3C Viral ProteasesCysteine EndopeptidasesRNA, ViralUntranslated RegionsViral Nonstructural ProteinsViral Proteins

Identifiers

PMID17537861
PMCPMC1951365
OpenAlexW2102430660

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.