ArticleNucleic acids research2007
CodonO: codon usage bias analysis within and across genomes.
Article in Nucleic acids research, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers, 1 of them a synthesis that pooled it.
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Who cites it
61 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Predicting Functional Effects of Synonymous Variants: A Systematic Review and Perspectives.Frontiers in genetics · 2019Pooled it
- Characterization and comparative analysis of the complete chloroplast genomes of twelve Allium species from Kazakhstan.Scientific reports · 2026Article
- Comparative Codon Usage Bias of CD2AP and BACH2 Across 49 Vertebrates: Implications for Porcine Macrophage Immunity inBiology · 2026Article
- Codon Usage Bias of the Polyphenol Oxidase Genes inPlants (Basel, Switzerland) · 2025Article
- Genome-Wide Identification and Characterisation of theInternational journal of molecular sciences · 2025Article
- Novel genetic variants of banana streak MY virus and banana streak IM virus naturally infecting banana in Northeast India.3 Biotech · 2024Article
- Comparative analysis of codon usage bias in the chloroplast genomes of eighteen Ampelopsideae species (Vitaceae).BMC genomic data · 2024Article
- Comparative and phylogenetic analysis of chloroplast genomes from four species in Quercus section Cyclobalanopsis.BMC genomic data · 2024Article
- Comprehensive Analysis of Phylogenetic Relationship and Optimal Codons in Mitochondrial Genomes of the GenusAnimals : an open access journal from MDPI · 2024Article
- Comparative and phylogenetic analysis of chloroplast genomes from ten species inFrontiers in plant science · 2024Article
- Synonymous sites for accessibility around microRNA binding sites in bacterial spot and speck disease resistance genes of tomato.Functional & integrative genomics · 2023Article
- Identification and in silico characterization of CSRP3 synonymous variants in dilated cardiomyopathy.Molecular biology reports · 2023Article
- Codon usage bias in chloroplast genes implicate adaptive evolution of four ginger species.Frontiers in plant science · 2023Article
- Comparative chloroplast genomes provided insights into the evolution and species identification on the Datureae plants.Frontiers in plant science · 2023Article
- An investigation of codon usage pattern analysis in pancreatitis associated genes.BMC genomic data · 2022Article
- Consistent Clustering Pattern of Prokaryotic Genes Based on Base Frequency at the Second Codon Position and its Association with Functional Category Preference.Interdisciplinary sciences, computational life sciences · 2022Article
- Mitogenome-wise codon usage pattern from comparative analysis of the first mitogenome of Blepharipa sp. (Muga uzifly) with other Oestroid flies.Scientific reports · 2022Article
- Genome-wide analysis of TALE superfamily in Triticum aestivum reveals TaKNOX11-A is involved in abiotic stress response.BMC genomics · 2022Article
- Comparative Genomics, Phylogenetics, Biogeography, and Effects of Climate Change onPlants (Basel, Switzerland) · 2022Article
- Codon usage bias.Molecular biology reports · 2022Review
1 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
unlabelledSynonymous codon usage biases are associated with various biological factors, such as gene expression level, gene length, gene translation initiation signal, protein amino acid composition, protein structure, tRNA abundance, mutation frequency and patterns, and GC compositions. Quantification of codon usage bias helps understand evolution of living organisms. A codon usage bias pipeline is demanding for codon usage bias analyses within and across genomes. Here we present a CodonO webserver service as a user-friendly tool for codon usage bias analyses across and within genomes in real time. The webserver is available at http//www.sysbiology.org/CodonO. CONTACT: wanhenry@yahoo.com.
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