Evidence map›Paper›PMID 17535911›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2007

Free methionine-(R)-sulfoxide reductase from Escherichia coli reveals a new GAF domain function.

Zhidong Lin, Lynnette C Johnson, Herbert Weissbach, Nathan Brot, Mark O Lively, W Todd Lowther

Open access · greenAbstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 133 citations in OpenAlex.

  1. Review
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  7. Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Methionine Redox Homeostasis in Protein Quality Control.Frontiers in molecular biosciences · 2021
    Review
  13. Ionizing Radiation-induced Proteomic Oxidation inMolecular & cellular proteomics : MCP · 2020
    Article
  14. Article
  15. Article
  16. Article
  17. Methionine sulfoxide reductase B fromThe Journal of biological chemistry · 2020
    Article
  18. Upregulation of PBP1B and LpoB inAntimicrobial agents and chemotherapy · 2019
    Article
  19. Article
  20. Review

6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Zhidong LinCenter for Structural Biology, Department of Biochemistry, Wake Forest University School of Medicine, Winston-Salem, NC 27157, USA.
Lynnette C Johnson
Herbert Weissbach
Nathan Brot
Mark O Lively
W Todd Lowther
Wake Forest University · USFlorida Atlantic University · USHospital for Special Surgery · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The reduction of methionine sulfoxide (MetO) is mediated by methionine sulfoxide reductases (Msr). The MsrA and MsrB families can reduce free MetO and MetO within a peptide or protein context. This process is stereospecific with the S- and R-forms of MetO repaired by MsrA and MsrB, respectively. Cell extracts from an MsrA(-)B(-) knockout of Escherichia coli have several remaining Msr activities. This study has identified an enzyme specific for the free form of Met-(R)-O, fRMsr, through proteomic analysis. The recombinant enzyme exhibits the same substrate specificity and is as active as MsrA family members. E. coli fRMsr is, however, 100- to 1,000-fold more active than non-selenocysteine-containing MsrB enzymes for free Met-(R)-O. The crystal structure of E. coli fRMsr was previously determined, but no known function was assigned. Thus, the function of this protein has now been determined. The structural similarity of the E. coli and yeast proteins suggests that most fRMsrs use three cysteine residues for catalysis and the formation of a disulfide bond to enclose a small active site cavity. This latter feature is most likely a key determinant of substrate specificity. Moreover, E. coli fRMsr is the first GAF domain family member to show enzymatic activity. Other GAF domain proteins substitute the Cys residues and others to specifically bind cyclic nucleotides, chromophores, and many other ligands for signal potentiation. Therefore, Met-(R)-O may represent a signaling molecule in response to oxidative stress and nutrients via the TOR pathway in some organisms.

Indexed as

Models, MolecularAmino Acid SequenceComputational BiologyEscherichia coliKineticsMass SpectrometryMethionineMethionine Sulfoxide ReductasesMolecular Sequence DataOxidoreductasesProtein Structure, TertiaryRecombinant ProteinsSequence Analysis, DNASubstrate SpecificityMethioninemethionine sulfoxidemethionine sulfoxide reductaseMethionine Sulfoxide ReductasesOxidoreductasesRecombinant Proteins

Identifiers

PMID17535911
PMCPMC1887594
OpenAlexW2026098127

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.