Evidence map›Paper›PMID 17535825›Full record

ArticlePlant physiology2007

Inositol 1,3,4,5,6-pentakisphosphate 2-kinase from maize: molecular and biochemical characterization.

Yuejin Sun, Mark Thompson, Gaofeng Lin, Holly Butler, Zhifang Gao, Scott Thornburgh, Kerrm Yau, Doug A Smith, Vipula K Shukla

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
5.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 96 citations in OpenAlex.

  1. Application of CRISPR/Cas9 in Crop Quality Improvement.International journal of molecular sciences · 2021
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  11. Phytic acid and raffinose series oligosaccharides metabolism in developing chickpea seeds.Physiology and molecular biology of plants : an international journal of functional plant biology · 2011
    Article
  12. Article
  13. Article
  14. Crystallization and preliminary X-ray diffraction analysis of inositol 1,3,4,5,6-pentakisphosphate kinase from Arabidopsis thaliana.Acta crystallographica. Section F, Structural biology and crystallization communications · 2010
    Article
  15. Article
  16. Article
  17. Isolation and characterization of a low phytic acid rice mutant reveals a mutation in the rice orthologue of maize MIK.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2008
    Article
  18. The rice OsLpa1 gene encodes a novel protein involved in phytic acid metabolism.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2008
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Yuejin SunDiscovery R&D, Dow AgroSciences, Indianapolis, IN 46268, USA. ysun@dow.com
Mark Thompson
Gaofeng Lin
Holly Butler
Zhifang Gao
Scott Thornburgh
Kerrm Yau
Doug A Smith
Vipula K Shukla
Indiana Department of Natural Resources · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Inositol 1,3,4,5,6-pentakisphosphate 2-kinase, an enzyme encoded by the gene IPK1, catalyzes the terminal step in the phytic acid biosynthetic pathway. We report here the isolation and characterization of IPK1 cDNA and genomic clones from maize (Zea mays). DNA Southern-blot analysis revealed that ZmIPK1 in the maize genome constitutes a small gene family with two members. Two nearly identical ZmIPK1 paralogs, designated as ZmIPK1A and ZmIPK1B, were identified. The transcripts of ZmIPK1A were detected in various maize tissues, including leaves, silks, immature ears, seeds at 12 d after pollination, midstage endosperm, and maturing embryos. However, the transcripts of ZmIPK1B were exclusively detected in roots. A variety of alternative splicing products of ZmIPK1A were discovered in maize leaves and seeds. These products are derived from alternative acceptor sites, alternative donor sites, and retained introns in the transcripts. Consequently, up to 50% of the ZmIPK1A transcripts in maize seeds and leaves have an interrupted open reading frame. In contrast, only one type of splicing product of ZmIPK1B was detected in roots. When expressed in Escherichia coli and subsequently purified, the ZmIPK1 enzyme catalyzes the conversion of myo-inositol 1,3,4,5,6-pentakisphosphate to phytic acid. In addition, it is also capable of catalyzing the phosphorylation of myo-inositol 1,4,6-trisphosphate, myo-inositol 1,4,5,6-tetrakisphosphate, and myo-inositol 3,4,5,6-tetrakisphosphate. Nuclear magnetic resonance spectroscopy analysis indicates that the phosphorylation product of myo-inositol 1,4,6-trisphosphate is inositol 1,2,4,6-tetrakisphosphate. Kinetic studies showed that the K(m) for ZmIPK1 using myo-inositol 1,3,4,5,6-pentakisphosphate as a substrate is 119 microm with a V(max) at 625 nmol/min/mg. These data describing the tissue-specific accumulation and alternative splicing of the transcripts from two nearly identical ZmIPK1 paralogs suggest that maize has a highly sophisticated regulatory mechanism controlling phytic acid biosynthesis.

Indexed as

Alternative SplicingAmino Acid SequenceBase SequenceKineticsMagnetic Resonance SpectroscopyMolecular Sequence DataPhosphotransferases (Alcohol Group Acceptor)Phytic AcidPlant LeavesPlant RootsSeedsSequence Analysis, DNASubstrate SpecificityZea maysinositol 1,3,4,5,6-pentakisphosphate 2-kinasePhosphotransferases (Alcohol Group Acceptor)Phytic Acid

Identifiers

PMID17535825
PMCPMC1914151
OpenAlexW2167973694

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.