Evidence map›Paper›PMID 17530158›Full record

ArticleThe Journal of membrane biology2006

Electrophysiological studies in Xenopus oocytes for the opening of Escherichia coli SecA-dependent protein-conducting channels.

Bor-Ruei Lin, Lila M Gierasch, Chun Jiang, Phang C Tai

Open access · greenAbstract read
In one paragraph

Article in The Journal of membrane biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact, top 88% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 21 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. SecA: a potential antimicrobial target.Future medicinal chemistry · 2015
    Review
  7. Mechanisms of Rose Bengal inhibition on SecA ATPase and ion channel activities.Biochemical and biophysical research communications · 2014
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Bor-Ruei LinDepartment of Biology, Georgia State University, 24 Peachtree Center Avenue, Atlanta, GA 30303, USA.
Lila M Gierasch
Chun Jiang
Phang C Tai
Georgia State University · USUniversity of Massachusetts Amherst · US

Funding

PROTEIN TRANSLOCATION &EXPORT IN GRAM-NEGATIVE BACTERIAR01GM034766 · NIGMS · GEORGIA STATE UNIVERSITY · PI TAI, PHANG C. · 1985 to 2005
$2.5M
TARGETING SEQUENCES;CONFORMATIONS &INTERACTIONSR01GM034962 · NIGMS · UNIVERSITY OF TEXAS SW MED CTR/DALLAS · PI GIERASCH, LILA M · 1985 to 2006
$1.4M
NIGMS NIH HHS GM 034766NIGMS NIH HHS GM 034962NIGMS NIH HHS R01 GM034766NIGMS NIH HHS R01 GM034962
6 · The paper itself

Abstract

Protein translocation in Escherichia coli requires protein-conducting channels in cytoplasmic membranes to allow precursor peptides to pass through with adenosine triphosphate (ATP) hydrolysis. Here, we report a novel, sensitive method that detects the opening of the SecA-dependent protein-conducting channels at the nanogram level. E. coli inverted membrane vesicles were injected into Xenopus oocytes, and ionic currents were recorded using the two-electrode voltage clamp. Currents were observed only in the presence of E. coli SecA in conjunction with E. coli membranes. Observed currents showed outward rectification in the presence of KCl as permeable ions and were significantly enhanced by coinjection with the precursor protein proOmpA or active LamB signal peptide. Channel activity was blockable with sodium azide or adenylyl 5'-(beta,gamma-methylene)-diphosphonate, a nonhydrolyzable ATP analogue, both of which are known to inhibit SecA protein activity. Endogenous oocyte precursor proteins also stimulated ion current activity and can be inhibited by puromycin. In the presence of puromycin, exogenous proOmpA or LamB signal peptides continued to enhance ionic currents. Thus, the requirement of signal peptides and ATP hydrolysis for the SecA-dependent currents resembles biochemical protein translocation assay with E. coli membrane vesicles, indicating that the Xenopus oocyte system provides a sensitive assay to study the role of Sec and precursor proteins in the formation of protein-conducting channels using electrophysiological methods.

Indexed as

Adenosine TriphosphatasesAdenosine TriphosphateAnimalsBacterial Outer Membrane ProteinsBacterial ProteinsCell MembraneEnzyme InhibitorsEscherichia coliEscherichia coli ProteinsFemaleIon ChannelsMembrane PotentialsMembrane Transport ProteinsOocytesPotassium ChlorideProtein PrecursorsAdenosine TriphosphatasesAdenosine TriphosphateBacterial Outer Membrane ProteinsBacterial ProteinsEnzyme InhibitorsEscherichia coli ProteinsIon ChannelsLamB signal peptide, E coliMembrane Transport ProteinsOMPA outer membrane proteinsPotassium ChlorideProtein PrecursorsProtein Sorting SignalsSecA ProteinsSEC Translocation ChannelsSodium Azide

Identifiers

PMID17530158
PMCPMC2896742
OpenAlexW2080558698

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.