Evidence map›Paper›PMID 17515439›Full record

ArticleSchizophrenia bulletin2008

Linkage disequilibrium patterns and functional analysis of RGS4 polymorphisms in relation to schizophrenia.

Kodavali V Chowdari, Mikhil Bamne, Joel Wood, Michael E Talkowski, Karoly Mirnics, Pat Levitt, David A Lewis, Vishwajit L Nimgaonkar

Open access · bronzeAbstract read
In one paragraph

Article in Schizophrenia bulletin, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Association Analysis Between SNPs in the Promoter Region ofNeuropsychiatric disease and treatment · 2020
    Article
  3. Review
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  5. Review
  6. Analysis of the association ofNeuropsychiatric disease and treatment · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Kodavali V ChowdariDepartment of Psychiatry, University of Pittsburgh School of Medicine, Pittsburgh, PA 15213, USA.
Mikhil Bamne
Joel Wood
Michael E Talkowski
Karoly Mirnics
Pat Levitt
David A Lewis
Vishwajit L Nimgaonkar
University of Pittsburgh · USVanderbilt University · US

Funding

THE ROLE OF PREFRONTAL CORTEX IN THE COGNITIVE DYSFUNCTIONS OF SCHIZOPHRENIAP50MH045156 · NIMH · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI SAMPSON, ALLAN R · 1990 to 2007
$17.9M
MHIRC FOR THE STUDY OF MOOD AND ANXIETY DISORDERSP30MH030915 · NIMH · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KUPFER, DAVID J · 1995 to 2005
$11.9M
A Neurobehavioral Family Study of SchizophreniaR01MH063480 · NIMH · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI NIMGAONKAR, VISHWAJIT LAXMIKANT · 2001 to 2018
$6.1M
Genetic Susceptibility in SchizophreniaR01MH056242 · NIMH · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI NIMGAONKAR, VISHWAJIT LAXMIKANT · 2002 to 2007
$2.9M
Schizophrenia Liability Genes Among African-AmericansR01MH066263 · NIMH · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI NIMGAONKAR, VISHWAJIT LAXMIKANT · 2002 to 2006
$2.5M
GENETIC SUSCEPTIBILITY IN SCHIZOPHRENIAR10MH056242 · NIMH · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI NIMGAONKAR, VISHWAJIT LAXMIKANT · 1997 to 2001
$1.2M
CLINICAL RESEARCH CENTER STUDY OF AFFECTIVE DISORDERSP50MH030915 · NIMH · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KUPFER, DAVID J · 1985 to 1994
–
NIMH NIH HHS MH30915NIMH NIH HHS MH45156NIMH NIH HHS MH56242NIMH NIH HHS MH63480NIMH NIH HHS MH66263NIMH NIH HHS P30 MH030915NIMH NIH HHS P50 MH045156NIMH NIH HHS R01 MH056242NIMH NIH HHS R01 MH063480NIMH NIH HHS R01 MH066263NIMH NIH HHS R10 MH056242
6 · The paper itself

Abstract

The regulator of G-protein signaling 4 (RGS4, chromosome 1q23.3) plays a critical role in G-protein function. Four common single-nucleotide polymorphisms (SNPs) localized between the 5' upstream sequence and the first intron, as well as 2 haplotypes derived from these SNPs may confer liability to schizophrenia (SZ). However, the pattern of associations varies among samples. To help clarify the putative associations, we report the following analyses: (1) a comprehensive catalog of common polymorphisms, (2) linkage disequilibrium (LD) and association analyses using these SNPs, and (3) functional analysis based on dual-luciferase promoter assays. We identified 62 SNPs from a 20-kb genomic region spanning RGS4, of which 26 are common polymorphisms with a minor allele frequency (MAF) of >5%. LD analysis suggested 5 clusters of SNPs (r(2) > .8). Association analyses using the novel SNPs were consistent with the prior reports, but further localization was constrained by significant LD across the region. The 2 haplotypes reported to confer liability to SZ had significant promoter activity compared with promoterless constructs, suggesting a functional role for both haplotypes. Further analyses of promoter sequences are warranted to understand transcriptional regulation at RGS4. This information will be useful for further analysis of samples in which genetic association of RGS4 polymorphisms with SZ has been reported.

Indexed as

ExonsGenotypeHaplotypesHumansIntronsLinkage DisequilibriumPolymorphism, Single NucleotideRGS ProteinsSchizophreniaRGS4 proteinRGS Proteins

Identifiers

PMID17515439
PMCPMC2632380
OpenAlexW2137884877

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.