Evidence map›Paper›PMID 17513380›Full record

ArticleBiophysical journal2007

Two-color fluorescence analysis of individual virions determines the distribution of the copy number of proteins in herpes simplex virus particles.

Richard W Clarke, Nilah Monnier, Haitao Li, Dejian Zhou, Helena Browne, David Klenerman

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. A molecular mechanism for probabilistic bet hedging and its role in viral latency.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  3. Article
  4. A single gD glycoprotein can mediate infection by Herpes simplex virus.Journal of the American Chemical Society · 2013
    Article
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 3 countries.

Richard W ClarkeDepartment of Chemistry and Division of Virology, University of Cambridge, Cambridge, United Kingdom.
Nilah Monnier
Haitao Li
Dejian Zhou
Helena Browne
David Klenerman
University of Cambridge · GBHarvard University · US

Funding

Wellcome Trust
6 · The paper itself

Abstract

We present a single virion method to determine absolute distributions of copy number in the protein composition of viruses and apply it to herpes simplex virus type 1. Using two-color coincidence fluorescence spectroscopy, we determine the virion-to-virion variability in copy numbers of fluorescently labeled tegument and envelope proteins relative to a capsid protein by analyzing fluorescence intensity ratios for ensembles of individual dual-labeled virions and fitting the resulting histogram of ratios. Using EYFP-tagged capsid protein VP26 as a reference for fluorescence intensity, we are able to calculate the mean and also, for the first time to our knowledge, the variation in numbers of gD, VP16, and VP22 tegument. The measurement of the number of glycoprotein D molecules was in good agreement with independent measurements of average numbers of these glycoproteins in bulk virus preparations, validating the method. The accuracy, straightforward data processing, and high throughput of this technique make it widely applicable to the analysis of the molecular composition of large complexes in general, and it is particularly suited to providing insights into virus structure, assembly, and infectivity.

Indexed as

AntibodiesCapsid ProteinsCyclic AMPFluorescenceFluorescent DyesGreen Fluorescent ProteinsHerpes Simplex Virus Protein Vmw65Herpesvirus 1, HumanLuminescent ProteinsRecombinant Fusion ProteinsViral Envelope ProteinsViral Structural ProteinsVirion8-aminohexylamino cAMPAntibodiesCapsid Proteinscapsid protein VP26, herpes simplex virus type 1Cyclic AMPenhanced green fluorescent proteinFluorescent Dyesglycoprotein D, Human herpesvirus 1Green Fluorescent ProteinsHerpes Simplex Virus Protein Vmw65herpes simplex virus type 1 protein VP22Luminescent ProteinsRecombinant Fusion ProteinsViral Envelope ProteinsViral Structural Proteins

Identifiers

PMID17513380
PMCPMC1929035
OpenAlexW2037996634

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.