Evidence map›Paper›PMID 17513371›Full record

ArticleBiophysical journal2007

Macromolecular crowding induces a molten globule state in the C-terminal domain of histone H1.

Alicia Roque, Inma Ponte, Pedro Suau

Abstract read
In one paragraph

Article in Biophysical journal, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Review
  2. Review
  3. Pitfalls of Using ANS Dye Under Molecular Crowding Conditions.International journal of molecular sciences · 2024
    Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Liquid-Liquid Phase Separation in Crowded Environments.International journal of molecular sciences · 2020
    Review
  10. Article
  11. Review
  12. Review
  13. Article
  14. What macromolecular crowding can do to a protein.International journal of molecular sciences · 2014
    Review
  15. Review
  16. Molecular-crowding effects on single-molecule RNA folding/unfolding thermodynamics and kinetics.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Alicia RoqueDepartamento de Bioquímica y Biología Molecular, Facultad de Biociencias, Universidad Autónoma de Barcelona, 08193 Bellaterra, Barcelona, Spain.
Inma Ponte
Pedro Suau

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We studied the secondary structure of the C-terminal domains of the histone H1 subtypes H1 degrees (C-H1 degrees ) and H1t (C-H1t) in the presence of macromolecular crowding agents (Ficoll 70 and PEG 6000) by IR spectroscopy. The carboxyl-terminal domain has little structure in aqueous solution but became extensively folded in the presence of crowding agents. In 30% PEG, C-H1 degrees contained 19% alpha-helix, 28% beta-sheet, 16% turns, and 31% open loops. Similar proportions were observed in 30% Ficoll 70 and for C-H1t in both crowding agents. The proportions of secondary structure motifs were comparable to those of the DNA-bound domain. Kratky plots of the small-angle x-ray scattering showed that in crowding agents the C-terminus had the compaction of a globular state. Progressive dissipation of the secondary structure and a linear increase in partial heat capacity with temperature together with increased binding of ANS indicated that the C-terminus is not cooperatively folded in crowded conditions. Native-like secondary structure and compactness in absence of folding cooperativity indicate that the C-terminus in crowding agents is in a molten globule state. Folding of the C-terminus in crowded conditions may increase the rate of the transition toward the DNA-bound state and facilitate H1 diffusion inside cell nuclei.

Indexed as

Anilino NaphthalenesulfonatesBinding SitesBiophysical PhenomenaBiophysicsCalorimetry, Differential ScanningCircular DichroismFluorescent DyesHistonesMultiprotein ComplexesProtein FoldingProtein Structure, SecondaryProtein Structure, TertiaryRecombinant ProteinsScattering, RadiationSpectrometry, FluorescenceSpectroscopy, Fourier Transform Infrared1-anilino-8-naphthalenesulfonateAnilino NaphthalenesulfonatesFluorescent DyesHistonesMultiprotein ComplexesRecombinant Proteins

Identifiers

PMID17513371
PMCPMC1959549

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.