Evidence map›Paper›PMID 17507486›Full record

ArticleJournal of virology2007

Conserved changes in envelope function during human immunodeficiency virus type 1 coreceptor switching.

Cristina Pastore, Rebecca Nedellec, Alejandra Ramos, Oliver Hartley, John L Miamidian, Jacqueline D Reeves, Donald E Mosier

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.6field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Clinical use of CCR5 inhibitors in HIV and beyond.Journal of translational medicine · 2011
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. How HIV changes its tropism: evolution and adaptation?Current opinion in HIV and AIDS · 2009
    Review
  13. Article
  14. Article
  15. Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Cristina PastoreDepartment of Immunology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA.
Rebecca Nedellec
Alejandra Ramos
Oliver Hartley
John L Miamidian
Jacqueline D Reeves
Donald E Mosier
Scripps Research Institute · USUniversity of Pennsylvania · USUniversity of Geneva · CH

Funding

Topical Agents to Prevent Mucosal HIV TransmissionP01AI051649 · NIAID · UNIVERSITY OF GENEVA · PI LEDERMAN, MICHAEL MARCEL · 2002 to 2006
$7.5M
HIV CORECEPTOR SWITCHINGR01AI052778 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI MOSIER, DONALD E · 2003 to 2010
$3.8M
Impact of HIV envelope determinants of entry inhibitionR21AI058701 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI REEVES, JACQUELINE D · 2004 to 2005
$476k
HIV Coreceptor SwitchingR56AI052778 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI MOSIER, DONALD E · 2011 to 2011
$474k
NIAID NIH HHS AI051649NIAID NIH HHS AI052778NIAID NIH HHS AI058701NIAID NIH HHS P01 AI051649NIAID NIH HHS R01 AI052778NIAID NIH HHS R21 AI058701NIAID NIH HHS R56 AI052778
6 · The paper itself

Abstract

We studied the evolution of human immunodeficiency virus type 1 (HIV-1) envelope function during the process of coreceptor switching from CCR5 to CXCR4. Site-directed mutagenesis was used to introduce most of the possible intermediate mutations in the envelope for four distinct coreceptor switch mutants, each with a unique pattern of CCR5 and CXCR4 utilization that extended from highly efficient use of both coreceptors to sole use of CXCR4. Mutated envelopes with some preservation of entry function on either CCR5- or CXCR4-expressing target cells were further characterized for their sensitivity to CCR5 or CXCR4 inhibitors, soluble CD4, and the neutralizing antibodies b12-IgG and 4E10. A subset of mutated envelopes was also studied in direct CD4 or CCR5 binding assays and in envelope-mediated fusion reactions. Coreceptor switch intermediates displayed increased sensitivity to CCR5 inhibitors (except for a few envelopes with mutations in V2 or C2) that correlated with a loss in CCR5 binding. As use of CXCR4 improved, infection mediated by the mutated envelopes became more resistant to soluble CD4 inhibition and direct binding to CD4 increased. These changes were accompanied by increasing resistance to the CXCR4 inhibitor AMD3100. Sensitivity to neutralizing antibody was more variable, although infection of CXCR4-expressing targets was generally more sensitive to neutralization by both b12-IgG and 4E10 than infection of CCR5-expressing target cells. These changes in envelope function were uniform in all four series of envelope mutations and thus were independent of the final use of CCR5 and CXCR4. Decreased CCR5 and increased CD4 binding appear to be common features of coreceptor switch intermediates.

Indexed as

Amino Acid SequenceCell LineEvolution, MolecularGene Products, envHIV-1HumansMolecular Sequence DataMutagenesis, Site-DirectedReceptors, CCR5Receptors, CXCR4Virus InternalizationGene Products, envReceptors, CCR5Receptors, CXCR4

Identifiers

PMID17507486
PMCPMC1951319
OpenAlexW2085330449

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.