Evidence map›Paper›PMID 17504939›Full record

ArticleGenes & development2007

Dissociation of eIF1 from the 40S ribosomal subunit is a key step in start codon selection in vivo.

Yuen-Nei Cheung, David Maag, Sarah F Mitchell, Christie A Fekete, Mikkel A Algire, Julie E Takacs, Nikolay Shirokikh, Tatyana Pestova, Jon R Lorsch, Alan G Hinnebusch

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 112 papers.

0numbers the graph read from it
0cells of the map it votes in
112citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

112 citing papers in PubMed, 167 citations in OpenAlex.

  1. Article
  2. Article
  3. Structural basis for non-AUG translation regulation by 5MPs.bioRxiv : the preprint server for biology · 2025
    Article
  4. eIF1 and eIF5 dynamically control translation start site fidelity.Nature structural & molecular biology · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Review
  11. Editorial: RNA machines.Frontiers in genetics · 2023
    Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Rebirth of the translational machinery: The importance of recycling ribosomes.BioEssays : news and reviews in molecular, cellular and developmental biology · 2022
    Article
  17. Ribosomal RNA 2'-Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  18. Translation Phases in Eukaryotes.Methods in molecular biology (Clifton, N.J.) · 2022
    Review
  19. Article
  20. Article

52 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 4 countries.

Yuen-Nei CheungLaboratory of Gene Regulation and Development, National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, Maryland 20892, USA.
David Maag
Sarah F Mitchell
Christie A Fekete
Mikkel A Algire
Julie E Takacs
Nikolay Shirokikh
Tatyana Pestova
Jon R Lorsch
Alan G Hinnebusch
Johns Hopkins Medicine · USJohns Hopkins University · USState University of New York · USEunice Kennedy Shriver National Institute of Child Health and Human Development · USHealth and Human Development (2HD) Research Network · CMNational Institute of Child Health · PK

Funding

Translational &Transcriptional Control Of GenesZ01HD001004 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI HINNEBUSCH, ALAN G · 1985 to 2008
$5.7M
SCANNING PROCESS IN EUKARYOTIC TRANSLATIONR01GM059660 · NIGMS · SUNY DOWNSTATE MEDICAL CENTER · PI PESTOVA, TATYANA V · 1999 to 2016
$4.7M
KINETIC DISSECTION OF EUKARYOTIC TRANSLATION INITIATIONR01GM062128 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI GREEN, RACHEL · 2000 to 2013
$4.6M
Intramural NIH HHSNIGMS NIH HHS GM59660NIGMS NIH HHS GM62128NIGMS NIH HHS R01 GM059660NIGMS NIH HHS R01 GM062128
6 · The paper itself

Abstract

Selection of the AUG start codon is a key step in translation initiation requiring hydrolysis of GTP in the eIF2*GTP*Met-tRNA(i)(Met) ternary complex (TC) and subsequent P(i) release from eIF2*GDP*P(i). It is thought that eIF1 prevents recognition of non-AUGs by promoting scanning and blocking P(i) release at non-AUG codons. We show that Sui(-) mutations in Saccharomyces cerevisiae eIF1, which increase initiation at UUG codons, reduce interaction of eIF1 with 40S subunits in vitro and in vivo, and both defects are diminished in cells by overexpressing the mutant proteins. Remarkably, Sui(-) mutation ISQLG(93-97)ASQAA (abbreviated 93-97) accelerates eIF1 dissociation and P(i) release from reconstituted preinitiation complexes (PICs), whereas a hyperaccuracy mutation in eIF1A (that suppresses Sui(-) mutations) decreases the eIF1 off-rate. These findings demonstrate that eIF1 dissociation is a critical step in start codon selection, which is modulated by eIF1A. We also describe Gcd(-) mutations in eIF1 that impair TC loading on 40S subunits or destabilize the multifactor complex containing eIF1, eIF3, eIF5, and TC, showing that eIF1 promotes PIC assembly in vivo beyond its important functions in AUG selection.

Indexed as

Codon, InitiatorElectrophoresis, Polyacrylamide GelEukaryotic Initiation Factor-1Models, MolecularMutagenesis, Site-DirectedMutationProtein BiosynthesisRibosome Subunits, Small, EukaryoticSaccharomyces cerevisiaeCodon, InitiatorEukaryotic Initiation Factor-1

Identifiers

PMID17504939
PMCPMC1865493
OpenAlexW2114250673

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.