Evidence map›Paper›PMID 17500593›Full record

ArticlePLoS genetics2007

Y chromosome lineage- and village-specific genes on chromosomes 1p22 and 6q27 control visceral leishmaniasis in Sudan.

E Nancy Miller, Manal Fadl, Hiba S Mohamed, Abier Elzein, Sarra E Jamieson, Heather J Cordell, Christopher S Peacock, Michaela Fakiola, Madhuri Raju, Eltahir A Khalil and 4 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed, 1 pooled it
7.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 1 synthesis or guideline pooled it, 73 citations in OpenAlex.

  1. Pooled it
  2. Racism is not about "race".Scientific reports · 2023
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  9. Fine mapping under linkage peaks for symptomatic or asymptomatic outcomes of Leishmania infantum infection in Brazil.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2016
    Article
  10. Immune regulation during chronic visceral leishmaniasis.PLoS neglected tropical diseases · 2014
    Review
  11. Article
  12. Genetic and functional evaluation of the role of DLL1 in susceptibility to visceral leishmaniasis in India.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2012
    Article
  13. Article
  14. Article
  15. Parasite stress promotes homicide and child maltreatment.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2011
    Review
  16. Article
  17. Article
  18. Evolution in health and medicine Sackler colloquium: Consanguinity, human evolution, and complex diseases.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 2 countries.

E Nancy MillerCambridge Institute for Medical Research, University of Cambridge School of Clinical Medicine, Cambridge, United Kingdom.
Manal Fadl
Hiba S Mohamed
Abier Elzein
Sarra E Jamieson
Heather J Cordell
Christopher S Peacock
Michaela Fakiola
Madhuri Raju
Eltahir A Khalil
Ahmed Elhassan
Ahmed M Musa
Muntaser E Ibrahim
Jenefer M Blackwell
University of Cambridge · GBUniversity of Khartoum · SD

Funding

Wellcome Trust
6 · The paper itself

Abstract

Familial clustering and ethnic differences suggest that visceral leishmaniasis caused by Leishmania donovani is under genetic control. A recent genome scan provided evidence for a major susceptibility gene on Chromosome 22q12 in the Aringa ethnic group in Sudan. We now report a genome-wide scan using 69 families with 173 affected relatives from two villages occupied by the related Masalit ethnic group. A primary ten-centimorgan scan followed by refined mapping provided evidence for major loci at 1p22 (LOD score 5.65; nominal p = 1.72 x 10(-7); empirical p < 1 x 10(-5); lambdaS = 5.1) and 6q27 (LOD score 3.74; nominal p = 1.68 x 10(-5); empirical p < 1 x 10(-4); lambdaS = 2.3) that were Y chromosome-lineage and village-specific. Neither village supported a visceral leishmaniasis susceptibility gene on 22q12. The results suggest strong lineage-specific genes due to founder effect and consanguinity in these recently immigrant populations. These chance events in ethnically uniform African populations provide a powerful resource in the search for genes and mechanisms that regulate this complex disease.

Indexed as

PedigreeRural PopulationAdolescentAdultAllelesChildChild, PreschoolChromosome MappingChromosomes, Human, Pair 1Chromosomes, Human, Pair 6Chromosomes, Human, YConsanguinityDNA, MitochondrialFemaleGenome, HumanHaplotypesDNA, Mitochondrial

Identifiers

PMID17500593
PMCPMC1866354
OpenAlexW2075786894

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.