Evidence map›Paper›PMID 17500065›Full record

ArticleThe Journal of biological chemistry2007

PTIP associates with MLL3- and MLL4-containing histone H3 lysine 4 methyltransferase complex.

Young-Wook Cho, Teresa Hong, Sunhwa Hong, Hong Guo, Hong Yu, Doyeob Kim, Tad Guszczynski, Gregory R Dressler, Terry D Copeland, Markus Kalkum and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 349 papers.

0numbers the graph read from it
0cells of the map it votes in
349citing papers in PubMed
14.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

349 citing papers in PubMed, 523 citations in OpenAlex.

  1. Article
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  9. International journal of molecular sciences · 2025
    Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. MLL4 regulates postnatal palate growth and midpalatal suture development.Frontiers in cell and developmental biology · 2025
    Article
  16. Article
  17. Article
  18. MLL4 regulates postnatal palate growth and midpalatal suture development.bioRxiv : the preprint server for biology · 2024
    Article
  19. Article
  20. Article

289 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 7 institutions in 1 country.

Young-Wook ChoNuclear Receptor Biology Section, Clinical Endocrinology Branch, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892, USA.
Teresa Hong
Sunhwa Hong
Hong Guo
Hong Yu
Doyeob Kim
Tad Guszczynski
Gregory R Dressler
Terry D Copeland
Markus Kalkum
Kai Ge
National Institutes of Health · USNational Institute of Diabetes and Digestive and Kidney Diseases · USCity of Hope · USCity Of Hope National Medical Center · USMichigan Medicine · USNational Institutes of Health Clinical Center · USUniversity of Michigan–Ann Arbor · US

Funding

Regulation of PPARgamma Expression and Adipogenesis by PTIP-Associated FactorsZIADK075003 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI GE, KAI · 2009 to 2025
$17.6M
Epigenomic Regulation of PPARgamma and AdipogenesisZIADK075017 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI GE, KAI · 2009 to 2025
$12.4M
Epigenomic Regulation of Nuclear Receptor Target Gene ExpressionZIADK047055 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI GE, KAI · 2009 to 2017
$2.3M
Transcriptional Regulation of Fat Metabolism by PPARgammZ01DK075003 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI GE, KAI · 2005 to 2008
$826k
Histone Methylation and Transcriptional Regulation by PPARsZ01DK047055 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI GE, KAI · 2007 to 2008
$755k
Intramural NIH HHS Z01 DK047055Intramural NIH HHS Z01 DK075003Intramural NIH HHS Z99 DK999999Intramural NIH HHS ZIA DK047055Intramural NIH HHS ZIA DK075003Intramural NIH HHS ZIA DK075017
6 · The paper itself

Abstract

PTIP, a protein with tandem BRCT domains, has been implicated in DNA damage response. However, its normal cellular functions remain unclear. Here we show that while ectopically expressed PTIP is capable of interacting with DNA damage response proteins including 53BP1, endogenous PTIP, and a novel protein PA1 are both components of a Set1-like histone methyltransferase (HMT) complex that also contains ASH2L, RBBP5, WDR5, hDPY-30, NCOA6, SET domain-containing HMTs MLL3 and MLL4, and substoichiometric amount of JmjC domain-containing putative histone demethylase UTX. PTIP complex carries robust HMT activity and specifically methylates lysine 4 (K4) on histone H3. Furthermore, PA1 binds PTIP directly and requires PTIP for interaction with the rest of the complex. Moreover, we show that hDPY-30 binds ASH2L directly. The evolutionarily conserved hDPY-30, ASH2L, RBBP5, and WDR5 likely constitute a subcomplex that is shared by all human Set1-like HMT complexes. In contrast, PTIP, PA1, and UTX specifically associate with the PTIP complex. Thus, in cells without DNA damage agent treatment, the endogenous PTIP associates with a Set1-like HMT complex of unique subunit composition. As histone H3 K4 methylation associates with active genes, our study suggests a potential role of PTIP in the regulation of gene expression.

Indexed as

AnimalsCarrier ProteinsCell Line, TransformedDNA-Binding ProteinsDNA DamageHeLa CellsHistone-Lysine N-MethyltransferaseHistone MethyltransferasesHistonesHumansLysineMethylationMiceMice, KnockoutMultiprotein ComplexesNuclear ProteinsCarrier ProteinsDNA-Binding ProteinsHistone-Lysine N-MethyltransferaseHistone MethyltransferasesHistonesKMT2C protein, humanKmt2c protein, mouseLysineMLL4 protein, mouseMultiprotein ComplexesNuclear ProteinsPAXIP1 protein, humanPaxip1 protein, mouseProtein Methyltransferases

Identifiers

PMID17500065
PMCPMC2729684
OpenAlexW2072194885

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.