Evidence map›Paper›PMID 17496150›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2007

Studies on peptide:N-glycanase-p97 interaction suggest that p97 phosphorylation modulates endoplasmic reticulum-associated degradation.

Gang Zhao, Xiaoke Zhou, Liqun Wang, Guangtao Li, Hermann Schindelin, William J Lennarz

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 98 citations in OpenAlex.

  1. Article
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  4. Article
  5. Review
  6. Article
  7. Article
  8. Allosteric activation of VCP, an AAA unfoldase, by small molecule mimicry.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  9. Article
  10. Review
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  12. Article
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  15. Review
  16. Versatile control of the CDC48 segregase by the plant UBX-containing (PUX) proteins.Computational and structural biotechnology journal · 2021
    Review
  17. Article
  18. Phospho-SerCell reports · 2020
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Gang ZhaoCenter for Structural Biology, Deparatment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY 11794-5115, USA.
Xiaoke Zhou
Liqun Wang
Guangtao Li
Hermann Schindelin
William J Lennarz
Stony Brook University · USUniversity of Würzburg · DE

Funding

The Molybdenum Cofactor: Biosynthesis and FunctionR01DK054835 · NIDDK · STATE UNIVERSITY NEW YORK STONY BROOK · PI SCHINDELIN, HERMANN · 1999 to 2007
$2.1M
NIDDK NIH HHS DK54835NIDDK NIH HHS R01 DK054835NIGMS NIH HHS GM33814
6 · The paper itself

Abstract

During endoplasmic reticulum-associated degradation, the multifunctional AAA ATPase p97 is part of a protein degradation complex. p97 associates via its N-terminal domain with various cofactors to recruit ubiquitinated substrates. It also interacts with alternative substrate-processing cofactors, such as Ufd2, Ufd3, and peptide:N-glycanase (PNGase) in higher eukaryotes. These cofactors determine different fates of the substrates and they all bind outside of the N-terminal domain of p97. Here, we describe a cofactor-binding motif of p97 contained within the last 10 amino acid residues of the C terminus, which is both necessary and sufficient to mediate interactions of p97 with PNGase and Ufd3. The crystal structure of the N-terminal domain of PNGase in complex with this motif provides detailed insight into the interaction between p97 and its substrate-processing cofactors. Phosphorylation of p97's highly conserved penultimate tyrosine residue, which is the main phosphorylation site during T cell receptor stimulation, completely blocks binding of either PNGase or Ufd3 to p97. This observation suggests that phosphorylation of this residue modulates endoplasmic reticulum-associated protein degradation activity by discharging substrate-processing cofactors.

Indexed as

Adenosine TriphosphatasesAmino Acid MotifsAnimalsCrystallography, X-RayDNAEndoplasmic ReticulumMiceModels, MolecularNuclear ProteinsPeptide-N4-(N-acetyl-beta-glucosaminyl) Asparagine AmidasePhosphorylationPhosphotyrosineProtein BindingProtein Structure, QuaternaryProtein Structure, TertiaryAdenosine TriphosphatasesDNANuclear Proteinsp97 ATPasePeptide-N4-(N-acetyl-beta-glucosaminyl) Asparagine AmidasePhosphotyrosine

Identifiers

PMID17496150
PMCPMC1885580
OpenAlexW2146885208

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.