Evidence map›Paper›PMID 17496122›Full record

ArticleThe Plant cell2007

Arabidopsis VIRE2 INTERACTING PROTEIN2 is required for Agrobacterium T-DNA integration in plants.

Ajith Anand, Alexander Krichevsky, Sebastian Schornack, Thomas Lahaye, Tzvi Tzfira, Yuhong Tang, Vitaly Citovsky, Kirankumar S Mysore

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 104 citations in OpenAlex.

  1. Article
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  3. Transcriptome Analysis ofPlants (Basel, Switzerland) · 2024
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  4. Genomic consequences associated with Agrobacterium-mediated transformation of plants.The Plant journal : for cell and molecular biology · 2024
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  9. Frontiers in plant science · 2021
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  10. Exploring the Functional Relationship betweenAntioxidants (Basel, Switzerland) · 2020
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  12. Biodesign research · 2020
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  13. Frontiers in plant science · 2020
    Article
  14. Article
  15. Pathways of DNA Transfer to Plants fromAnnual review of phytopathology · 2019
    Article
  16. Article
  17. Frontiers in plant science · 2018
    Article
  18. Article
  19. Science advances · 2017
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Ajith AnandPlant Biology Division, Samuel Roberts Noble Foundation, Ardmore, Oklahoma 73401, USA.
Alexander Krichevsky
Sebastian Schornack
Thomas Lahaye
Tzvi Tzfira
Yuhong Tang
Vitaly Citovsky
Kirankumar S Mysore
Noble Research Institute · USMartin Luther University Halle-Wittenberg · DEState University of New York · USStony Brook University · USUniversity of Michigan–Ann Arbor · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Agrobacterium tumefaciens-mediated genetic transformation is an efficient tool for genetic engineering of plants. VirE2 is a single-stranded DNA binding Agrobacterium protein that is transported into the plant cell and presumably protects the T-DNA from degradation. Using a yeast two-hybrid system, we identified Arabidopsis thaliana VIRE2-INTERACTING PROTEIN2 (VIP2) with a NOT domain that is conserved in both plants and animals. Furthermore, we provide evidence supporting VIP2 interaction with VIP1, a basic domain/leucine zipper motif-containing protein required for nuclear import and integration of T-DNA. Virus-induced gene silencing of VIP2 in Nicotiana benthamiana and characterization of the Arabidopsis vip2 mutant (At vip2) demonstrate that VIP2 is required for Agrobacterium-mediated stable transformation but not for transient transformation. Assays based upon a promoter-trap vector and quantification of T-DNA integration further confirmed VIP2 involvement in T-DNA integration. Interestingly, VIP2 transcripts were induced to a greater extent over prolonged periods after infection with a T-DNA transfer-competent Agrobacterium strain compared with the transfer-deficient Agrobacterium strain. Transcriptome analyses of At vip2 suggest that VIP2 is likely a transcriptional regulator, and the recalcitrancy to transformation in At vip2 is probably due to the combination of muted gene expression response upon Agrobacterium infection and repression of histone genes resulting in decreased T-DNA integration events.

Indexed as

Active Transport, Cell NucleusAgrobacterium tumefaciensAmino Acid SequenceArabidopsisArabidopsis ProteinsBacterial ProteinsCarrier ProteinsCell NucleusDNA, BacterialDNA-Binding ProteinsGene Expression ProfilingGene Expression Regulation, PlantGene SilencingHistonesIon ChannelsMolecular Sequence DataArabidopsis ProteinsBacterial ProteinsCarrier ProteinsDNA, BacterialDNA-Binding ProteinsHistonesIon ChannelsRNA, MessengerT-DNATranscription Factors, GeneralVIP2 protein, ArabidopsisvirE2 protein, Agrobacterium

Identifiers

PMID17496122
PMCPMC1913729
OpenAlexW2145793246

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.