Evidence map›Paper›PMID 17496112›Full record

ArticlePlant physiology2007

Identification of a bipartite jasmonate-responsive promoter element in the Catharanthus roseus ORCA3 transcription factor gene that interacts specifically with AT-Hook DNA-binding proteins.

Débora Vom Endt, Marina Soares e Silva, Jan W Kijne, Giancarlo Pasquali, Johan Memelink

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 126 citations in OpenAlex.

  1. Review
  2. Article
  3. Genome-wide analysis of radishFrontiers in plant science · 2024
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Transcriptome and Network Analyses of Heterostyly inPlants (Basel, Switzerland) · 2020
    Article
  16. The regulation ofPlant direct · 2019
    Article
  17. Article
  18. Hydrophobin HFBII-4 from Trichoderma asperellum induces antifungal resistance in poplar.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2019
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Débora Vom EndtInstitute of Biology, Clusius Laboratory, Leiden University, Leiden, The Netherlands.
Marina Soares e Silva
Jan W Kijne
Giancarlo Pasquali
Johan Memelink
Universidade Federal do Rio Grande do Sul · BRLeiden University · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Jasmonates are plant signaling molecules that play key roles in defense against certain pathogens and insects, among others, by controlling the biosynthesis of protective secondary metabolites. In Catharanthus roseus, the APETALA2-domain transcription factor ORCA3 is involved in the jasmonate-responsive activation of terpenoid indole alkaloid biosynthetic genes. ORCA3 gene expression is itself induced by jasmonate. By loss- and gain-of-function experiments, we located a 74-bp region within the ORCA3 promoter, which contains an autonomous jasmonate-responsive element (JRE). The ORCA3 JRE is composed of two important sequences: a quantitative sequence responsible for a high level of expression and a qualitative sequence that appears to act as an on/off switch in response to methyl jasmonate. We isolated 12 different DNA-binding proteins having one of four different types of DNA-binding domains, using the ORCA3 JRE as bait in a yeast (Saccharomyces cerevisiae) one-hybrid transcription factor screening. The binding of one class of proteins bearing a single AT-hook DNA-binding motif was affected by mutations in the quantitative sequence within the JRE. Two of the AT-hook proteins tested had a weak activating effect on JRE-mediated reporter gene expression, suggesting that AT-hook family members may be involved in determining the level of expression of ORCA3 in response to jasmonate.

Indexed as

AT-Hook MotifsPromoter Regions, GeneticAcetatesBase SequenceCatharanthusCyclopentanesDNA-Binding ProteinsDNA, ComplementaryDNA Mutational AnalysisG-Box Binding FactorsGene Expression Regulation, PlantMolecular Sequence DataOxylipinsPlant ProteinsSaccharomyces cerevisiaeTranscription FactorsAcetatesCyclopentanesDNA-Binding ProteinsDNA, ComplementaryG-Box Binding Factorsmethyl jasmonateORCA3 protein, plantOxylipinsPlant ProteinsTranscription Factors

Identifiers

PMID17496112
PMCPMC1914126
OpenAlexW2038835788

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.