Evidence map›Paper›PMID 17493123›Full record

ArticleMolecular microbiology2007

Antirepression as a second mechanism of transcriptional activation by a minor groove binding protein.

Wiep Klaas Smits, Tran Thu Hoa, Leendert W Hamoen, Oscar P Kuipers, David Dubnau

Abstract read
In one paragraph

Article in Molecular microbiology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Wiep Klaas SmitsDepartment of Genetics, University of Groningen, Kerklaan 30, 9751NN, Haren, The Netherlands.
Tran Thu Hoa
Leendert W Hamoen
Oscar P Kuipers
David Dubnau

Funding

Understanding the mechanism of genetic transformationR01GM057720 · NIGMS · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI DAVID A DUBNAU, Matthew B Neiditch · 1998 to 2026
$15.4M
NIGMS NIH HHS GM057720NIGMS NIH HHS R01 GM057720
6 · The paper itself

Abstract

Competence for genetic transformation in the bacterium Bacillus subtilis is a bistable differentiation process governed by the minor groove DNA binding protein ComK. No detectable comK transcription occurs in the absence of an intact comK gene, indicating that ComK has auto-activating properties. ComK auto-stimulation, which is dependent on ComK binding to the comK promoter, is a critical step in competence development, ensuring quick and high-level expression of the late-competence genes. Auto-stimulation is also essential for the bistable expression pattern of competence. Here, we demonstrate that ComK acts as an activator at its own promoter by antagonizing the action of two repressors, Rok and CodY. Importantly, antirepression occurs without preventing binding of the repressing proteins, suggesting that ComK and the repressors might bind at distinct surfaces of the DNA helix. DegU, a DNA binding protein known to increase the affinity of ComK for its own promoter, potentiates the antirepression activity of ComK. We postulate that antirepression is primarily achieved through modulation of DNA topology. Although to our knowledge ComK is the only DNA binding protein shown to act in this novel fashion, other minor groove binding proteins may act similarly.

Indexed as

Nucleic Acid ConformationTranscriptional ActivationBacterial ProteinsBinding SitesChromomycinsDNA, BacterialDNA-Binding ProteinsDNA-Directed RNA PolymerasesMethyl GreenModels, GeneticMutationPromoter Regions, GeneticProtein BindingRepressor ProteinsTranscription FactorsBacterial ProteinsChromomycinscomK protein, Bacillus subtilisDNA, BacterialDNA-Binding ProteinsDNA-Directed RNA PolymerasesMethyl GreenRepressor ProteinsTranscription Factors

Identifiers

PMID17493123
PMCPMC3831528

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.