Evidence map›Paper›PMID 17490474›Full record

ArticleBMC genomics2007

Genomics of glycopeptidolipid biosynthesis in Mycobacterium abscessus and M. chelonae.

Fabienne Ripoll, Caroline Deshayes, Sophie Pasek, Françoise Laval, Jean-Luc Beretti, Franck Biet, Jean-Loup Risler, Mamadou Daffé, Gilles Etienne, Jean-Louis Gaillard and 1 more

Open access · goldAbstract readComparative Study
In one paragraph

Article in BMC genomics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 120 citations in OpenAlex.

  1. Tobramycin enhancesProceedings of the National Academy of Sciences of the United States of America · 2026
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  9. Genomics Insights intoPathogens (Basel, Switzerland) · 2024
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  13. Evolution ofVirulence · 2023
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  18. "Omic" Approaches to Bacteria and Antibiotic Resistance Identification.International journal of molecular sciences · 2022
    Review
  19. Article
  20. Cell surface (Amsterdam, Netherlands) · 2021
    Article

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 7 institutions in 2 countries.

Fabienne RipollLaboratoire de Microbiologie, Université de Versailles Saint-Quentin-en-Yvelines, Faculté de Médecine de Paris-Ile de France-Ouest, F-92380 Garches, France. ripoll.f@libertysurf.fr <ripoll.f@libertysurf.fr>
Caroline Deshayes
Sophie Pasek
Françoise Laval
Jean-Luc Beretti
Franck Biet
Jean-Loup Risler
Mamadou Daffé
Gilles Etienne
Jean-Louis Gaillard
Jean-Marc Reyrat
Institut de Pharmacologie et de Biologie Structurale · FRUniversité de Versailles Saint-Quentin-en-Yvelines · FRUniversité Paris Cité · FRCentre National de la Recherche Scientifique · FRInfectiologie Animale et Santé Publique · FRInserm · FRLaboratoire de Recherche en Informatique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe outermost layer of the bacterial surface is of crucial importance because it is in constant interaction with the host. Glycopeptidolipids (GPLs) are major surface glycolipids present on various mycobacterial species. In the fast-grower model organism Mycobacterium smegmatis, GPL biosynthesis involves approximately 30 genes all mapping to a single region of 65 kb.

resultsWe have recently sequenced the complete genomes of two fast-growers causing human infections, Mycobacterium abscessus (CIP 104536T) and M. chelonae (CIP 104535T). We show here that these two species contain genes corresponding to all those of the M. smegmatis "GPL locus", with extensive conservation of the predicted protein sequences consistent with the production of GPL molecules indistinguishable by biochemical analysis. However, the GPL locus appears to be split into several parts in M. chelonae and M. abscessus. One large cluster (19 genes) comprises all genes involved in the synthesis of the tripeptide-aminoalcohol moiety, the glycosylation of the lipopeptide and methylation/acetylation modifications. We provide evidence that a duplicated acetyltransferase (atf1 and atf2) in M. abscessus and M. chelonae has evolved through specialization, being able to transfer one acetyl at once in a sequential manner. There is a second smaller and distant (M. chelonae, 900 kb; M. abscessus, 3 Mb) cluster of six genes involved in the synthesis of the fatty acyl moiety and its attachment to the tripeptide-aminoalcohol moiety. The other genes are scattered throughout the genome, including two genes encoding putative regulatory proteins.

conclusionAlthough these three species produce identical GPL molecules, the organization of GPL genes differ between them, thus constituting species-specific signatures. An hypothesis is that the compact organization of the GPL locus in M. smegmatis represents the ancestral form and that evolution has scattered various pieces throughout the genome in M. abscessus and M. chelonae.

Indexed as

AcetyltransferasesBase SequenceBiosynthetic PathwaysChromatography, Thin LayerEvolution, MolecularGenome, BacterialGlycolipidsGlycopeptidesMolecular Sequence DataMycobacterium chelonaeSequence Analysis, DNASpecies SpecificitySpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationAcetyltransferasesGlycolipidsGlycopeptides

Identifiers

PMID17490474
PMCPMC1885439
OpenAlexW2076729878

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.