Evidence map›Paper›PMID 17486369›Full record

ArticleHuman genetics2007

Genome-wide linkage scan of prostate cancer Gleason score and confirmation of chromosome 19q.

Daniel J Schaid, Janet L Stanford, Shannon K McDonnell, Miia Suuriniemi, Laura McIntosh, Danielle M Karyadi, Erin E Carlson, Kerry Deutsch, Marta Janer, Lee Hood and 1 more

Abstract read
PubMed Publisher
In one paragraph

Article in Human genetics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Genome-wide association study identifies a genetic variant associated with risk for more aggressive prostate cancer.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2011
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  14. Evaluation of 8q24 and 17q risk loci and prostate cancer mortality.Clinical cancer research : an official journal of the American Association for Cancer Research · 2009
    Article
  15. The role of the BRCA2 gene in susceptibility to prostate cancer revisited.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2008
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Daniel J SchaidDivision of Biostatistics, Mayo Clinic, Rochester, MN, USA.
Janet L Stanford
Shannon K McDonnell
Miia Suuriniemi
Laura McIntosh
Danielle M Karyadi
Erin E Carlson
Kerry Deutsch
Marta Janer
Lee Hood
Elaine A Ostrander

Funding

GENETIC EPIDEMIOLOGY OF PROSTATE CANCERR01CA080122 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI STANFORD, JANET L · 1999 to 2008
$3.8M
GENETICS OF PROSTATE CANCER SUSCEPTIBILITYR01CA078836 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI NELSON, PETER S · 1999 to 2005
$3.3M
Genetics of Cancer Susceptibility--Multisystem ApproachK05CA090754 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI OSTRANDER, ELAINE A · 2001 to 2004
$373k
Intramural NIH HHSNCI NIH HHS K05 CA90754NCI NIH HHS R01 CA080122NCI NIH HHS R01 CA78836
6 · The paper itself

Abstract

Despite evidence that prostate cancer has a genetic etiology, it has been extremely difficult to confirm genetic linkage results across studies, emphasizing the large extent of genetic heterogeneity associated with this disease. Because prostate cancer is common--approximately one in six men will be diagnosed with prostate cancer in their life--genetic linkage studies are likely plagued by phenocopies (i.e., men with prostate cancer due to environmental or lifestyle factors), weakly penetrant alleles, or a combination of both, making it difficult to replicate linkage findings. One way to account for heterogeneous causes is to use clinical information that is related to the aggressiveness of disease as an endpoint for linkage analyses. Gleason grade is a measure of prostate tumor differentiation, with higher grades associated with more aggressive disease. This semi-quantitative score has been used as a quantitative trait for linkage analysis in several prior studies. Our aim was to determine if prior linkage reports of Gleason grade to specific loci could be replicated, and to ascertain if new regions of linkage could be found. Gleason scores were available for 391 affected sib pairs from 183 hereditary prostate cancer pedigrees as part of the PROGRESS study. Analyzing Gleason score as a quantitative trait, and using microsatellite markers, suggestive evidence for linkage (P-value <or= 0.001) was found on chromosomes 19q and 5q, with P-values <or= 0.01 observed on chromosomes 3q, 7q, and 16q. Our results confirm reports of Gleason score linkage to chromosome 19q and suggest new loci for further investigation.

Indexed as

AdultAgedChromosome MappingChromosomes, Human, Pair 19FemaleGenome, HumanHumansMaleMicrosatellite RepeatsMiddle AgedPedigreeProstatic NeoplasmsQuantitative Trait Loci

Identifiers

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.