Evidence map›Paper›PMID 17483474›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2007

Conserved region I of human coactivator TAF4 binds to a short hydrophobic motif present in transcriptional regulators.

Xiaoping Wang, Dagmar M Truckses, Shinako Takada, Tatsushi Matsumura, Naoko Tanese, Raymond H Jacobson

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. What do Transcription Factors Interact With?Journal of molecular biology · 2021
    Review
  6. Observational
  7. Article
  8. Article
  9. Article
  10. Article
  11. Zooming in on Transcription Preinitiation.Journal of molecular biology · 2016
    Review
  12. Article
  13. Structural basis of transcription initiation by RNA polymerase II.Nature reviews. Molecular cell biology · 2015
    Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Xiaoping WangDepartment of Biochemistry and Molecular Biology, Graduate School in Biomedical Sciences Program in Genes and Development, University of Texas M. D. Anderson Cancer Center, 1515 Holcombe Boulevard, Houston, TX 77030, USA.
Dagmar M Truckses
Shinako Takada
Tatsushi Matsumura
Naoko Tanese
Raymond H Jacobson
The University of Texas MD Anderson Cancer Center · USNew York University · US

Funding

The TFIID Complex-Biophysical &Structural StudiesR01GM069769 · NIGMS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI TAKADA, SHINAKO · 2004 to 2008
$1.4M
NIGMS NIH HHS GM069769NIGMS NIH HHS R01 GM069769
6 · The paper itself

Abstract

TBP-associated factor 4 (TAF4), an essential subunit of the TFIID complex acts as a coactivator for multiple transcriptional regulators, including Sp1 and CREB. However, little is known regarding the structural properties of the TAF4 subunit that lead to the coactivator function. Here, we report the crystal structure at 2.0-A resolution of the human TAF4-TAFH domain, a conserved domain among all metazoan TAF4, TAF4b, and ETO family members. The hTAF4-TAFH structure adopts a completely helical fold with a large hydrophobic groove that forms a binding surface for TAF4 interacting factors. Using peptide phage display, we have characterized the binding preference of the hTAF4-TAFH domain for a hydrophobic motif, DPsiPsizetazetaPsiPhi, that is present in a number of nuclear factors, including several important transcriptional regulators with roles in activating, repressing, and modulating posttranslational modifications. A comparison of the hTAF4-TAFH structure with the homologous ETO-TAFH domain reveals several critical residues important for hTAF4-TAFH target specificity and suggests that TAF4 has evolved in response to the increased transcriptional complexity of metazoans.

Indexed as

Amino Acid MotifsAmino Acid SequenceBasic-Leucine Zipper Transcription FactorsBinding SitesConserved SequenceCrystallography, X-RayCyclic AMP Response Element-Binding ProteinHumansMolecular Sequence DataProtein Structure, TertiaryTATA-Binding Protein Associated FactorsTranscription Factor TFIIDBasic-Leucine Zipper Transcription FactorsCREB3 protein, humanCREBZF protein, humanCyclic AMP Response Element-Binding ProteinTAF4 protein, humanTATA-Binding Protein Associated FactorsTranscription Factor TFIID

Identifiers

PMID17483474
PMCPMC1876534
OpenAlexW2151414190

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.