Evidence map›Paper›PMID 17483231›Full record

ArticleJournal of bacteriology2007

Deletion and substitution analysis of the Escherichia coli TonB Q160 region.

Hema Vakharia-Rao, Kyle A Kastead, Marina I Savenkova, Charles M Bulathsinghala, Kathleen Postle

Abstract read
In one paragraph

Article in Journal of bacteriology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Hema Vakharia-RaoSchool of Molecular Biosciences, Washington State University, Pullman, WA 99164, USA.
Kyle A Kastead
Marina I Savenkova
Charles M Bulathsinghala
Kathleen Postle

Funding

ENERGY TRANSDUCTION BETWEEN MEMBRANESR01GM042146 · NIGMS · WASHINGTON STATE UNIVERSITY · PI POSTLE, KATHLEEN · 1991 to 2011
$4.7M
NIGMS NIH HHS GM 42146NIGMS NIH HHS R01 GM042146
6 · The paper itself

Abstract

The active transport of iron siderophores and vitamin B(12) across the outer membrane (OM) of Escherichia coli requires OM transporters and the potential energy of the cytoplasmic membrane (CM) proton gradient and CM proteins TonB, ExbB, and ExbD. A region at the amino terminus of the transporter, called the TonB box, directly interacts with TonB Q160 region residues. R158 and R166 in the TonB Q160 region were proposed to play important roles in cocrystal structures of the TonB carboxy terminus with OM transporters BtuB and FhuA. In contrast to predictions based on the crystal structures, none of the single, double, or triple alanyl substitutions at arginyl residues significantly decreased TonB activity. Even the quadruple R154A R158A R166A R171A mutant TonB still retained 30% of wild-type activity. Up to five residues centered on TonB Q160 could be deleted without inactivating TonB or preventing its association with the OM. TonB mutant proteins with nested deletions of 7, 9, or 11 residues centered on TonB Q160 were inactive and appeared never to have associated with the OM. Because the 7-residue-deletion mutant protein (TonBDelta7, lacking residues S157 to Y163) could still form disulfide-linked dimers when combined with W213C or F202C in the TonB carboxy terminus, the TonBDelta7 deletion did not prevent necessary energy-dependent conformational changes that occur in the CM. Thus, it appeared that initial contact with the OM is made through TonB residues S157 to Y163. It is hypothesized that the TonB Q160 region may be part of a large disordered region required to span the periplasm and contact an OM transporter.

Indexed as

AlanineAmino Acid SequenceAmino Acid SubstitutionArginineBacterial Outer Membrane ProteinsBacteriophagesCarrier ProteinsCell MembraneColicinsElectrophoresis, Polyacrylamide GelEscherichia coliEscherichia coli ProteinsGene DeletionImmunoblottingMembrane ProteinsMolecular Sequence DataAlanineArginineBacterial Outer Membrane ProteinsCarrier ProteinsColicinsenterobactin receptorEscherichia coli ProteinsMembrane ProteinsReceptors, Cell SurfacetonB protein, E coli

Identifiers

PMID17483231
PMCPMC1913428

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.