Evidence map›Paper›PMID 17483226›Full record

ArticleJournal of bacteriology2007

Delineation of the Salmonella enterica serovar Typhimurium HilA regulon through genome-wide location and transcript analysis.

Inge M V Thijs, Sigrid C J De Keersmaecker, Abeer Fadda, Kristof Engelen, Hui Zhao, Michael McClelland, Kathleen Marchal, Jos Vanderleyden

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
11.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 76 citations in OpenAlex.

  1. Article
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  12. The Herbal Compound Thymol Targets MultipleFrontiers in pharmacology · 2021
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  16. Frontiers in cellular and infection microbiology · 2019
    Review
  17. Article
  18. Article
  19. Article
  20. Applied and environmental microbiology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Inge M V ThijsCentre of Microbial and Plant Genetics, K. U. Leuven, Kasteelpark Arenberg 20, 3001 Leuven, Belgium.
Sigrid C J De Keersmaecker
Abeer Fadda
Kristof Engelen
Hui Zhao
Michael McClelland
Kathleen Marchal
Jos Vanderleyden
KU Leuven · BESidney Kimmel Cancer Center · US

Funding

Comparative Genomics in the EnterobateriaceaeR01AI052237 · NIAID · WASHINGTON UNIVERSITY · PI WEINSTOCK, GEORGE M · 2002 to 2009
$4.1M
DETAILED RESTRICTION MAP--SALMONELLA TYPHIMURIUM GENOMER01AI034829 · NIAID · SIDNEY KIMMEL CANCER CENTER · PI MCCLELLAND, MICHAEL · 1993 to 2006
$1.9M
Salmonella Gene Expression in Complex EnvironmentsR21AI057733 · NIAID · SIDNEY KIMMEL CANCER CENTER · PI MCCLELLAND, MICHAEL · 2004 to 2004
$345k
NIAID NIH HHS AI 034829NIAID NIH HHS AI 057733NIAID NIH HHS AI 52237-06NIAID NIH HHS R01 AI034829NIAID NIH HHS R01 AI052237NIAID NIH HHS R21 AI057733
6 · The paper itself

Abstract

The Salmonella enterica serovar Typhimurium HilA protein is the key regulator for the invasion of epithelial cells. By a combination of genome-wide location and transcript analysis, the HilA-dependent regulon has been delineated. Under invasion-inducing conditions, HilA binds to most of the known target genes and a number of new target genes. The sopB, sopE, and sopA genes, encoding effector proteins secreted by the type III secretion system on Salmonella pathogenicity island 1 (SPI-1), were identified as being both bound by HilA and differentially regulated in an HilA mutant. This suggests a cooperative role for HilA and InvF in the regulation of SPI-1-secreted effectors. Also, siiA, the first gene of SPI-4, is both bound by HilA and differentially regulated in an HilA mutant, thus linking this pathogenicity island to the invasion key regulator. Finally, the interactions of HilA with the SPI-2 secretion system gene ssaH and the flagellar gene flhD imply a repressor function for HilA under invasion-inducing conditions.

Indexed as

Genome, BacterialBacterial ProteinsElectrophoretic Mobility Shift AssayGene Expression Regulation, BacterialModels, GeneticMutationOligonucleotide Array Sequence AnalysisPromoter Regions, GeneticProtein BindingRegulonSalmonella typhimuriumTrans-ActivatorsTranscription, GeneticBacterial ProteinsHilA protein, SalmonellaSopA protein, BacteriaSopB protein, SalmonellaSopE protein, SalmonellaTrans-Activators

Identifiers

PMID17483226
PMCPMC1913449
OpenAlexW1982591187

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.