Evidence map›Paper›PMID 17475858›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2007

Transcription of a productively rearranged Ig VDJC alpha does not require the presence of HS4 in the IgH 3' regulatory region.

Buyi Zhang, Adrienne Alaie-Petrillo, Maria Kon, Fubin Li, Laurel A Eckhardt

Open access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Buyi ZhangDepartment of Biological Sciences, Hunter College and Graduate Center of The City University of New York, New York, NY 10021, USA.
Adrienne Alaie-Petrillo
Maria Kon
Fubin Li
Laurel A Eckhardt
City University of New York · USHunter College · US

Funding

Gene Expression in Myeloma CellsR01AI030653 · NIAID · HUNTER COLLEGE · PI ECKHARDT, LAUREL A · 1990 to 2010
$3.4M
NCRR NIH HHS RR-0307NIAID NIH HHS AI30653NIAID NIH HHS R01 AI030653
6 · The paper itself

Abstract

V gene assembly, class switch recombination, and somatic hypermutation are gene-modifying processes essential to the development of an effective Ab response. If inappropriately applied, however, these processes can mediate genetic changes that lead to disease (e.g., lymphoma). A series of control elements within the Ig H chain (Igh) locus has been implicated in regulating these processes as well as in regulating IgH gene transcription. These include the intronic enhancer (Emu) and several elements at the 3' end of the locus (hs1,2, hs3a, hs3b, and hs4) known collectively as the 3' regulatory region. Although it is clear that the Emu plays a unique role in V gene assembly, it has not been established whether there are unique functions for each element within the 3' regulatory region. In earlier studies in mice and in mouse cell lines, pairwise deletion of hs3b and hs4 had a dramatic effect on both class switch recombination and IgH gene transcription; deletion of an element almost identical with hs3b (hs3a), however, yielded no discernible phenotype. To test the resulting hypothesis that hs4 is uniquely required for these processes, we induced the deletion of hs4 within a bacterial artificial chromosome transgene designed to closely approximate the 3' end of the natural Igh locus. When introduced into an Ig-secreting cell line, an Igalpha transcription unit within the bacterial artificial chromosome was expressed efficiently and the subsequent deletion of hs4 only moderately affected Igalpha expression. Thus, hs4 does not play a uniquely essential role in the transcription of a productively rearranged Ig VDJCalpha transcription unit.

Indexed as

Enhancer Elements, GeneticGene Rearrangement, B-Lymphocyte, Heavy ChainRegulatory Sequences, Nucleic AcidTranscription, Genetic3' Flanking RegionAnimalsCell Line, TumorImmunoglobulin AImmunoglobulin alpha-ChainsImmunoglobulin Constant RegionsMiceImmunoglobulin AImmunoglobulin alpha-ChainsImmunoglobulin Constant Regions

Identifiers

PMID17475858
PMCPMC2724394
OpenAlexW1525329897

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.