Evidence map›Paper›PMID 17475778›Full record

ArticleMolecular biology of the cell2007

Coordination of Hpr1 and ubiquitin binding by the UBA domain of the mRNA export factor Mex67.

Maria Hobeika, Christoph Brockmann, Nahid Iglesias, Carole Gwizdek, David Neuhaus, Françoise Stutz, Murray Stewart, Gilles Divita, Catherine Dargemont

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Regulation of gene expression by the ubiquitin-proteasome system.Seminars in cell & developmental biology · 2012
    Review
  6. Review
  7. Article
  8. Article
  9. Structure and interaction of ubiquitin-associated domain of human Fas-associated factor 1.Protein science : a publication of the Protein Society · 2009
    Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Maria HobeikaInstitut Jacques Monod, Universités Paris VI and VII, Centre National de la Recherche Scientifique, 75251 Paris Cedex 05, France.
Christoph Brockmann
Nahid Iglesias
Carole Gwizdek
David Neuhaus
Françoise Stutz
Murray Stewart
Gilles Divita
Catherine Dargemont
MRC Laboratory of Molecular Biology · GBSorbonne Université · FRCentre National de la Recherche Scientifique · FR

Funding

Medical Research Council MC_U105178934Medical Research Council MC_U105178939
6 · The paper itself

Abstract

The ubiquitin-associated (UBA) domain of the mRNA nuclear export receptor Mex67 helps in coordinating transcription elongation and nuclear export by interacting both with ubiquitin conjugates and specific targets, such as Hpr1, a component of the THO complex. Here, we analyzed substrate specificity and ubiquitin selectivity of the Mex67 UBA domain. UBA-Mex67 is formed by three helices arranged in a classical UBA fold plus a fourth helix, H4. Deletion or mutation of helix H4 strengthens the interaction between UBA-Mex67 and ubiquitin, but it decreases its affinity for Hpr1. Interaction with Hpr1 is required for Mex67 UBA domain to bind polyubiquitin, possibly by inducing an H4-dependent conformational change. In vivo, deletion of helix H4 reduces cotranscriptional recruitment of Mex67 on activated genes, and it also shows an mRNA export defect. Based on these results, we propose that H4 functions as a molecular switch that coordinates the interaction of Mex67 with ubiquitin bound to specific substrates, defines the selectivity of the Mex67 UBA domain for polyubiquitin, and prevents its binding to nonspecific substrates.

Indexed as

RNA TransportActive Transport, Cell NucleusCell NucleusKineticsNuclear Magnetic Resonance, BiomolecularNuclear ProteinsNucleocytoplasmic Transport ProteinsProtein BindingProtein Structure, SecondaryProtein Structure, TertiaryProtein TransportRNA-Binding ProteinsRNA, MessengerSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSequence DeletionHPR1 protein, S cerevisiaeMEX67 protein, S cerevisiaeNuclear ProteinsNucleocytoplasmic Transport ProteinsRNA-Binding ProteinsRNA, MessengerSaccharomyces cerevisiae ProteinsSolutionsUbiquitin

Identifiers

PMID17475778
PMCPMC1924821
OpenAlexW2164822723

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.