Evidence map›Paper›PMID 17472752›Full record

ArticleGenome biology2007

Decline of nucleotide excision repair capacity in aging Caenorhabditis elegans.

Joel N Meyer, Windy A Boyd, Gregory A Azzam, Astrid C Haugen, Jonathan H Freedman, Bennett Van Houten

Open access · goldAbstract read
In one paragraph

Article in Genome biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
1.6field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed, 118 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Genomic Instability and Epigenetic Changes during Aging.International journal of molecular sciences · 2023
    Review
  9. Review
  10. Article
  11. Review
  12. Article
  13. Molecular basis of reproductive senescence: insights from model organisms.Journal of assisted reproduction and genetics · 2021
    Review
  14. PCR-Based Determination of Mitochondrial DNA Copy Number in Multiple Species.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  15. Molecules (Basel, Switzerland) · 2020
    Review
  16. Article
  17. Article
  18. Article
  19. Genetic Defects in Mitochondrial Dynamics inInternational journal of molecular sciences · 2019
    Article
  20. Mitochondrial DNA Damage Does Not DetermineFrontiers in genetics · 2019
    Article

9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Joel N MeyerLaboratory of Molecular Genetics, National Institute of Environmental Health Sciences, Alexander Drive, Research Triangle Park, NC 27709, USA. joel.meyer@duke.edu
Windy A Boyd
Gregory A Azzam
Astrid C Haugen
Jonathan H Freedman
Bennett Van Houten
National Institute of Environmental Health Sciences · USTriangle · US

Funding

Comparative Genomic Responses to Environmental StressorsZ01ES102045 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI FREEDMAN, JONATHAN H · 2006 to 2008
$3.1M
NTP High Throughput C. elegans Screening CoreZ01ES102046 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI FREEDMAN, JONATHAN H · 2006 to 2008
$3.1M
Integrated Toxicology ProgramT32ES007031 · NIEHS · DUKE UNIVERSITY · PI DI GIULIO, RICHARD · 1985 to 2007
$2.4M
Studies Of Nucleotide Excision Repair ProteinsZ01ES061060 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI VAN HOUTEN, BENNETT · 1999 to 2008
$1.9M
Consequences Of Mitochondrial DNA DamageZ01ES061062 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI VAN HOUTEN, BENNETT · 1999 to 2008
$1.2M
Intramural NIH HHSNIEHS NIH HHS T32 ES007031NIEHS NIH HHS T32-ES-007031
6 · The paper itself

Abstract

backgroundCaenorhabditis elegans is an important model for the study of DNA damage and repair related processes such as aging, neurodegeneration, and carcinogenesis. However, DNA repair is poorly characterized in this organism. We adapted a quantitative polymerase chain reaction assay to characterize repair of DNA damage induced by ultraviolet type C (UVC) radiation in C. elegans, and then tested whether DNA repair rates were affected by age in adults.

resultsUVC radiation induced lesions in young adult C. elegans, with a slope of 0.4 to 0.5 lesions per 10 kilobases of DNA per 100 J/m2, in both nuclear and mitochondrial targets. L1 and dauer larvae were more than fivefold more sensitive to lesion formation than were young adults. Nuclear repair kinetics in a well expressed nuclear gene were biphasic in nongravid adult nematodes: a faster, first order (half-life about 16 hours) phase lasting approximately 24 hours and resulting in removal of about 60% of the photoproducts was followed by a much slower phase. Repair in ten nuclear DNA regions was 15% and 50% higher in more actively transcribed regions in young and aging adults, respectively. Finally, repair was reduced by 30% to 50% in each of the ten nuclear regions in aging adults. However, this decrease in repair could not be explained by a reduction in expression of nucleotide excision repair genes, and we present a plausible mechanism, based on gene expression data, to account for this decrease.

conclusionRepair of UVC-induced DNA damage in C. elegans is similar kinetically and genetically to repair in humans. Furthermore, this important repair process slows significantly in aging C. elegans, the first whole organism in which this question has been addressed.

Indexed as

AgingAnimalsCaenorhabditis elegansDNA DamageDNA RepairKineticsPolymerase Chain ReactionUltraviolet Rays

Identifiers

PMID17472752
PMCPMC1929140
OpenAlexW2135426914

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.