Evidence map›Paper›PMID 17470781›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2007

Cernunnos/XLF promotes the ligation of mismatched and noncohesive DNA ends.

Chun J Tsai, Sunny A Kim, Gilbert Chu

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 100 papers.

0numbers the graph read from it
0cells of the map it votes in
100citing papers in PubMed
7.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

100 citing papers in PubMed, 184 citations in OpenAlex.

  1. AScience advances · 2026
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40 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Chun J TsaiDepartment of Medicine, CCSR 1145, Division of Oncology, Stanford University Medical Center, Stanford, CA 94305-5151, USA.
Sunny A Kim
Gilbert Chu
Stanford University · US

Funding

MOLECULAR &CELLULAR IMMUNOBIOLOGYT32AI007290 · NIAID · STANFORD UNIVERSITY · PI Sean Curtis Bendall, Olivia M Martinez · 1985 to 2026
$27.0M
END JOINING REACTION IN DNA REPAIR &V(D)J RECOMBINATIONR01GM058120 · NIGMS · STANFORD UNIVERSITY · PI CHU, GILBERT · 1998 to 2005
$1.5M
NIAID NIH HHS T32 AI007290NIGMS NIH HHS R01 GM058120NIGMS NIH HHS R01 GM58120
6 · The paper itself

Abstract

Nonhomologous end-joining (NHEJ) repairs DNA double-strand breaks created by ionizing radiation or V(D)J recombination of the immunoglobulin genes. The breaks often leave mismatched or nonligatable ends, and NHEJ must repair the breaks with high efficiency and minimal nucleotide loss. Here, the NHEJ proteins Ku, DNA-dependent protein kinase catalytic subunit, XRCC4/Ligase IV, and Cernunnos/XRCC4-like factor joined mismatched and noncohesive DNA ends in the absence of processing factors. Depending on the mismatch, Cernunnos stimulated joining 8- to 150-fold. For substrates with a blunt end and a 3' overhanging end, Ku, XRCC4/Ligase IV, and Cernunnos ligated the 3' overhanging hydroxyl group to the 5' phosphate of the blunt end, leaving the other strand unjoined. This activity provides a mechanism for retaining 3' overhang sequences, as observed during V(D)J recombination in vivo. Thus, Cernunnos/XRCC4-like factor promotes a mismatched end (MEnd) DNA ligase activity to facilitate joining and to preserve DNA sequence. Furthermore, MEnd ligase activity may have applications in recombinant DNA technology.

Indexed as

DNA Mismatch RepairDNA-Binding ProteinsDNA HelicasesDNA Repair EnzymesHeLa CellsHumansKu AutoantigenRecombination, GeneticDNA-Binding ProteinsDNA HelicasesDNA Repair EnzymesKu AutoantigenNHEJ1 protein, humanXRCC4 protein, humanXRCC5 protein, human

Identifiers

PMID17470781
PMCPMC1859989
OpenAlexW1985363523

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.