Evidence map›Paper›PMID 17470548›Full record

ArticleMolecular and cellular biology2007

Histone deacetylase 7 functions as a key regulator of genes involved in both positive and negative selection of thymocytes.

Herbert G Kasler, Eric Verdin

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 64 citations in OpenAlex.

  1. Review
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  13. The Therapeutic Strategy of HDAC6 Inhibitors in Lymphoproliferative Disease.International journal of molecular sciences · 2018
    Review
  14. Article
  15. GeneDive: A gene interaction search and visualization tool to facilitate precision medicine.Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing · 2018
    Article
  16. Tonic Signals: Why Do Lymphocytes Bother?Trends in immunology · 2017
    Review
  17. Article
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  19. HDAC7 Ubiquitination by the E3 Ligase CBX4 Is Involved in Contextual Fear Conditioning Memory Formation.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2017
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Herbert G KaslerGladstone Institute of Virology and Immunology, 1650 Owens Street, San Francisco, CA 94158, USA.
Eric Verdin
Gladstone Institutes · USUniversity of California, San Francisco · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Histone deacetylase 7 (HDAC7) is highly expressed in CD4(+)/CD8(+) thymocytes and functions as a signal-dependent repressor of gene transcription during T-cell development. In this study, we expressed HDAC7 mutant proteins in a T-cell line and use DNA microarrays to identify transcriptional targets of HDAC7 in T cells. The changes in gene expression levels were compared to differential gene expression profiles associated with positive and negative thymic selection. This analysis reveals that HDAC7 regulates an extensive set of genes that are differentially expressed during both positive and negative thymic selection. Many of these genes play important functional roles in thymic selection, primarily via modulating the coupling between antigen receptor engagement and downstream signaling events. Consistent with the model that HDAC7 may play an important role in both positive and negative thymic selection, the expression of distinct HDAC7 mutants or the abrogation of HDAC7 expression can either enhance or inhibit the signal-dependent differentiation of a CD4(+)/CD8(+) cell line.

Indexed as

Genes, RegulatorSelection, GeneticAnimalsApoptosisCell DifferentiationDNA-Binding ProteinsGene Expression ProfilingGene Expression RegulationHistone DeacetylasesHumansMEF2 Transcription FactorsMiceMutant ProteinsMyogenic Regulatory FactorsNuclear Receptor Subfamily 4, Group A, Member 1Oligonucleotide Array Sequence AnalysisDNA-Binding ProteinsHDAC7 protein, humanHdac7 protein, mouseHistone DeacetylasesMef2a protein, mouseMEF2 Transcription FactorsMutant ProteinsMyogenic Regulatory FactorsNR4A1 protein, humanNr4a1 protein, mouseNuclear Receptor Subfamily 4, Group A, Member 1Receptors, Cytoplasmic and NuclearReceptors, SteroidTranscription Factors

Identifiers

PMID17470548
PMCPMC1951960
OpenAlexW2096457994

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.