Evidence map›Paper›PMID 17468963›Full record

ArticleMicrobial ecology2007

Phylogenetic analysis and fluorescence in situ hybridization detection of archaeal and bacterial endosymbionts in the anaerobic ciliate trimyema compressum.

Naoya Shinzato, Ichiro Watanabe, Xian-Ying Meng, Yuji Sekiguchi, Hideyuki Tamaki, Toru Matsui, Yoichi Kamagata

Abstract read
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In one paragraph

Article in Microbial ecology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 54 citations in OpenAlex.

  1. Article
  2. Symbionts of Ciliates and Ciliates as Symbionts.Indian journal of microbiology · 2024
    Review
  3. Article
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  8. Complete Genome Sequence of "Microbiology resource announcements · 2022
    Article
  9. Article
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  14. Symbiosis Studies in Microbial Ecology.Microbes and environments · 2016
    Article
  15. Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Naoya ShinzatoCenter of Molecular Biosciences, University of the Ryukyus, Nishihara-cho, Nakagami-gun, Okinawa, 903-0213, Japan. naoya-s@comb.u-ryukyu.ac.jp
Ichiro Watanabe
Xian-Ying Meng
Yuji Sekiguchi
Hideyuki Tamaki
Toru Matsui
Yoichi Kamagata
National Institute of Advanced Industrial Science and Technology · JPSmartFactory (Germany) · DEUniversity of the Ryukyus · JPUniversity of the Ryukyus University Hospital · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The anaerobic free-living ciliate, Trimyema compressum, is known to harbor both methanogenic archaeal and bacterial symbionts in the cytoplasm. To clarify their phylogenetic belongings, a full-cycle rRNA approach was applied to this symbiosis. Phylogenetic analysis showed that the methanogenic symbiont was related to Methanobrevibacter arboriphilicus, which was distantly related to symbionts found in other Trimyema species. This result suggested that Trimyema species do not require very specific methanogenic symbionts, and symbiont replacement could have occurred in the history of Trimyema species. On the other hand, the bacterial symbiont was located near the lineage of the family Syntrophomonadaceae in the phylum Firmicutes. The sequence similarity between the bacterial symbiont and the nearest species was 85%, indicating that bacterial symbionts may be specific to the Trimyema species. The elimination of bacterial symbionts from the ciliate cell by antibiotic treatment resulted in considerably decreased host growth. However, it was not restored by stigmasterol addition (<2 microg ml(-1)), which was different from the previous report that showed that the symbiont-free strain required exogenous sterols for growth. In addition, the decline of host growth was not accompanied by host metabolism shift toward the formation of more reduced products, which suggested that the contribution of bacterial symbionts to the host ciliate was not a dispose of excessive reducing equivalent arising from the host's fermentative metabolism as methanogenic symbionts do. This study showed that bacterial symbionts make a significant contribution to the host ciliate by an unknown function and suggested that interactions between bacterial symbionts and T. compressum are more complicated than hitherto proposed.

Indexed as

PhylogenySymbiosisAnaerobiosisAnimalsBacteriaCiliophoraDNA, ArchaealDNA, BacterialIn Situ Hybridization, FluorescenceMethanobrevibacterMolecular Sequence DataPolymorphism, Restriction Fragment LengthRNA, Ribosomal, 16SSequence Analysis, DNADNA, ArchaealDNA, BacterialRNA, Ribosomal, 16S

Identifiers

PMID17468963
OpenAlexW2013008861

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.