Evidence map›Paper›PMID 17468768›Full record

ArticleNature biotechnology2007

Genome sequence and identification of candidate vaccine antigens from the animal pathogen Dichelobacter nodosus.

Garry S A Myers, Dane Parker, Keith Al-Hasani, Ruth M Kennan, Torsten Seemann, Qinghu Ren, Jonathan H Badger, Jeremy D Selengut, Robert T Deboy, Hervé Tettelin and 15 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature biotechnology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 75 citations in OpenAlex.

  1. Article
  2. Genome sequence ofScience progress · 2021
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  6. Review
  7. Article
  8. Within-Flock Population Dynamics ofFrontiers in veterinary science · 2017
    Article
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  14. Article
  15. Article
  16. Type IV pilin proteins: versatile molecular modules.Microbiology and molecular biology reviews : MMBR · 2012
    Review
  17. Article
  18. Unity in variety--the pan-genome of the Chlamydiae.Molecular biology and evolution · 2011
    Article
  19. Article
  20. The structure of KPN03535 (gi|152972051), a novel putative lipoprotein from Klebsiella pneumoniae, reveals an OB-fold.Acta crystallographica. Section F, Structural biology and crystallization communications · 2010
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 3 institutions in 1 country.

Garry S A MyersThe Institute for Genomic Research, 9712 Medical Center Drive, Rockville, Maryland 20850, USA.
Dane Parker
Keith Al-Hasani
Ruth M Kennan
Torsten Seemann
Qinghu Ren
Jonathan H Badger
Jeremy D Selengut
Robert T Deboy
Hervé Tettelin
John D Boyce
Victoria P McCarl
Xiaoyan Han
William C Nelson
Ramana Madupu
Yasmin Mohamoud
Tara Holley
Nadia Fedorova
Hoda Khouri
Steven P Bottomley
Richard J Whittington
Ben Adler
J Glenn Songer
Julian I Rood
Ian T Paulsen
Australian Research Council · AUMonash University · AUMelbourne Bioinformatics · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dichelobacter nodosus causes ovine footrot, a disease that leads to severe economic losses in the wool and meat industries. We sequenced its 1.4-Mb genome, the smallest known genome of an anaerobe. It differs markedly from small genomes of intracellular bacteria, retaining greater biosynthetic capabilities and lacking any evidence of extensive ongoing genome reduction. Comparative genomic microarray studies and bioinformatic analysis suggested that, despite its small size, almost 20% of the genome is derived from lateral gene transfer. Most of these regions seem to be associated with virulence. Metabolic reconstruction indicated unsuspected capabilities, including carbohydrate utilization, electron transfer and several aerobic pathways. Global transcriptional profiling and bioinformatic analysis enabled the prediction of virulence factors and cell surface proteins. Screening of these proteins against ovine antisera identified eight immunogenic proteins that are candidate antigens for a cross-protective vaccine.

Indexed as

AnimalsAntigensChromosome MappingDichelobacter nodosusFoot RotGenome, BacterialSequence Analysis, DNAAntigens

Identifiers

PMID17468768
OpenAlexW2146585070

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.