Evidence map›Paper›PMID 17462668›Full record

ArticleJournal of molecular biology2007

A scFv antibody mutant isolated in a genetic screen for improved export via the twin arginine transporter pathway exhibits faster folding.

Brian Ribnicky, Thomas Van Blarcom, George Georgiou

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Engineering antibody fragments to fold in the absence of disulfide bonds.Protein science : a publication of the Protein Society · 2009
    Article
  10. Article
  11. Article
  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Brian RibnickyDepartment of Chemical Engineering, University of Texas, Austin, TX 78712, USA.
Thomas Van Blarcom
George Georgiou
The University of Texas at Austin · US

Funding

PROTEIN DISULFIDE BOND ISOMERIZATION IN E COLIR01GM055090 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI BECKWITH, JONATHAN · 1998 to 2009
$4.3M
Genetic Analysis of the Escherichia coli Tat PathwayR01GM069872 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI GEORGIOU, GEORGE GEORGIOU · 2004 to 2007
$936k
NIGMS NIH HHS R01 GM055090NIGMS NIH HHS R01 GM069872
6 · The paper itself

Abstract

Proteins destined for export across the cytoplasmic membrane via the post-translational Sec-dependent route have to be maintained in a largely unfolded state within the cytoplasm. In sharp contrast, only proteins that have folded into a native-like state within the cytoplasm are competent for export via the twin arginine translocation (Tat) pathway. Proteins that contain disulfide bonds, such as scFv antibody fragments, can be translocated via Tat only when expressed in Escherichia coli trxB gor mutant strains having an oxidizing cytoplasm. However, export is poor with the majority of the protein accumulating in the cytoplasm and only a fraction exported to the periplasmic space. Using a high throughput fluorescence screen, we isolated a mutant of the anti-digoxin 26-10 scFv from a large library of random mutants that is exported with a higher yield into the periplasm. In vitro refolding experiments revealed that the mutant scFv exhibits a 250% increase in the rate constant of the critical second phase of folding. This result suggests that Tat export competence is related to the protein folding rate and could be exploited for the isolation of faster folding protein mutants.

Indexed as

Genetic TechniquesMutationArginineCytoplasmDisulfidesEscherichia coliImmunoglobulin FragmentsImmunoglobulin Variable RegionKineticsMembrane Transport ProteinsOxygenProtein DenaturationProtein FoldingTime FactorsArginineDisulfidesImmunoglobulin FragmentsImmunoglobulin Variable RegionMembrane Transport ProteinsOxygen

Identifiers

PMID17462668
PMCPMC1995598
OpenAlexW2128747745

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.