Evidence map›Paper›PMID 17462576›Full record

ArticleChemistry & biology2007

Spin-labeled analogs of CMP-NeuAc as NMR probes of the alpha-2,6-sialyltransferase ST6Gal I.

Shan Liu, Andre Venot, Lu Meng, Fang Tian, Kelley W Moremen, Geert-Jan Boons, James H Prestegard

Abstract read
In one paragraph

Article in Chemistry & biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Sparse labeling of proteins: structural characterization from long range constraints.Journal of magnetic resonance (San Diego, Calif. : 1997) · 2014
    Review
  6. Article
  7. Article
  8. 13C-sialic acid labeling of glycans on glycoproteins using ST6Gal-I.Journal of the American Chemical Society · 2008
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Shan LiuComplex Carbohydrate Research Center, University of Georgia, Athens, GA 30602, USA.
Andre Venot
Lu Meng
Fang Tian
Kelley W Moremen
Geert-Jan Boons
James H Prestegard
University of Georgia · US

Funding

ZINC DEFICIENCY &PROTEIN EXPRESSION IN RAT OLFACTORY BULBSP41RR005351 · NCRR · UNIVERSITY OF GEORGIA (UGA) · PI VENOT, ANDRE · 1989 to 2011
$18.4M
Southeast Collaboratory for High-Field Biomolecular NMRP41GM066340 · NIGMS · UNIVERSITY OF GEORGIA (UGA) · PI PRESTEGARD, JAMES H · 2002 to 2006
$5.5M
NMR of Cell Surface OligosaccharidesR01GM033225 · NIGMS · YALE UNIVERSITY · PI PRESTEGARD, JAMES H. · 1985 to 2021
$4.6M
NMR INVESTIGATIONS OF CELL SURFACE OLIGOSACCHARIDESR37GM033225 · NIGMS · UNIVERSITY OF GEORGIA (UGA) · PI PRESTEGARD, JAMES H. · 1999 to 2008
$3.0M
NCRR NIH HHS P41 RR005351NCRR NIH HHS RR05351NIGMS NIH HHS GM033225NIGMS NIH HHS GM066340NIGMS NIH HHS P41 GM066340NIGMS NIH HHS R01 GM033225NIGMS NIH HHS R37 GM033225
6 · The paper itself

Abstract

Structural data on mammalian proteins are often difficult to obtain by conventional NMR approaches because of an inability to produce samples with uniform isotope labeling in bacterial expression hosts. Proteins with sparse isotope labels can be produced in eukaryotic hosts by using isotope-labeled forms of specific amino acids, but structural analysis then requires information from experiments other than nuclear Overhauser effects. One source of alternate structural information is distance-dependent perturbation of spin relaxation times by nitroxide spin-labeled analogs of natural protein ligands. Here, we introduce spin-labeled analogs of sugar nucleotide donors for sialyltransferases, specifically, CMP-TEMPO (CMP-4-O-[2,2,6,6-tetramethylpiperidine-1-oxyl]) and CMP-4carboxyTEMPO (CMP-4-O-[4-carboxy-2,2,6,6-tetramethylpiperidinine-1-oxyl]). An ability to identify resonances from active site residues and produce distance constraints is illustrated on a (15)N phenylalanine-labeled version of the structurally uncharacterized, alpha-2,6-linked sialyltransferase, ST6Gal I.

Indexed as

Nuclear Magnetic Resonance, Biomolecularbeta-D-Galactoside alpha 2-6-SialyltransferaseCyclic N-OxidesCytidine Monophosphate N-Acetylneuraminic AcidMolecular ProbesNitrogen IsotopesSialyltransferasesSpin Labelsbeta-D-Galactoside alpha 2-6-SialyltransferaseCyclic N-OxidesCytidine Monophosphate N-Acetylneuraminic AcidMolecular ProbesNitrogen IsotopesSialyltransferasesSpin LabelsTEMPO

Identifiers

PMID17462576
PMCPMC3968682
OpenAlexW2081974876

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.